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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3556830 |
| Transcript ID | Lj1g3v3556830.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Cicer arietinum] gi|502158545|ref|XP_004511192.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 45 | 517 | 473 | 0 | – | |
| PANTHER | 45 | 517 | 473 | 0 | – | |
| Gene3D | 71 | 105 | 35 | 5.30E-06 | ||
| Pfam | 73 | 120 | 48 | 4.40E-09 | ||
| ProSiteProfiles | 74 | 108 | 35 | 10.161 | ||
| TIGRFAM | 77 | 109 | 33 | 3.20E-05 | ||
| ProSiteProfiles | 109 | 143 | 35 | 5.382 | ||
| Gene3D | 142 | 264 | 123 | 5.30E-06 | ||
| ProSiteProfiles | 144 | 174 | 31 | 6.785 | ||
| Pfam | 149 | 174 | 26 | 0.3 | ||
| ProSiteProfiles | 175 | 209 | 35 | 11.137 | ||
| TIGRFAM | 178 | 206 | 29 | 2.30E-06 | ||
| Pfam | 178 | 206 | 29 | 4.20E-07 | ||
| TIGRFAM | 209 | 236 | 28 | 1.50E-05 | ||
| ProSiteProfiles | 210 | 236 | 27 | 6.807 | ||
| Pfam | 236 | 284 | 49 | 3.60E-11 | ||
| ProSiteProfiles | 237 | 271 | 35 | 12.145 | ||
| TIGRFAM | 239 | 273 | 35 | 1.40E-09 | ||
| ProSiteProfiles | 272 | 306 | 35 | 7.037 | ||
| ProSiteProfiles | 307 | 337 | 31 | 6.774 | ||
| Pfam | 337 | 384 | 48 | 8.70E-14 | ||
| ProSiteProfiles | 338 | 372 | 35 | 13.241 | ||
| TIGRFAM | 340 | 373 | 34 | 1.10E-08 | ||
| ProSiteProfiles | 373 | 407 | 35 | 7.059 | ||
| ProSiteProfiles | 409 | 439 | 31 | 6.577 | ||
| Pfam | 412 | 436 | 25 | 0.075 | ||
| Gene3D | 469 | 493 | 25 | 5.30E-06 | ||
| ProSiteProfiles | 475 | 509 | 35 | 7.914 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v3556830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3556830.1, powered by CORGI.
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