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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3834390 |
| Transcript ID | Lj1g3v3834390.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao] gi|508710875|gb|EOY02772.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 4 | 4 | – | – | |
| Phobius | 5 | 15 | 11 | – | – | |
| Phobius | 16 | 19 | 4 | – | – | |
| Phobius | 20 | 521 | 502 | – | – | |
| PANTHER | 50 | 396 | 347 | 1.80E-234 | – | |
| PANTHER | 50 | 396 | 347 | 1.80E-234 | – | |
| SUPERFAMILY | 58 | 386 | 329 | 7.04E-32 | ||
| ProSiteProfiles | 61 | 501 | 441 | 32.806 | ||
| Gene3D | 249 | 401 | 153 | 2.50E-32 | ||
| Pfam | 293 | 385 | 93 | 6.00E-06 | ||
| CDD | 308 | 385 | 78 | 2.77E-04 | – | |
| SUPERFAMILY | 435 | 500 | 66 | 7.04E-32 | ||
| PANTHER | 444 | 505 | 62 | 1.80E-234 | – | |
| PANTHER | 444 | 505 | 62 | 1.80E-234 | – | |
| Gene3D | 449 | 500 | 52 | 2.50E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. | ||
| Molecular function | RNA methyltransferase activity | Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. |
Expression pattern of Lj1g3v3834390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3834390.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.