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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3904160 |
| Transcript ID | Lj1g3v3904160.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Cicer arietinum] gi|502106810|ref|XP_004493063.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | – | – | |
| SignalP | 1 | 13 | 13 | – | – | |
| PANTHER | 35 | 535 | 501 | 0 | – | |
| PANTHER | 35 | 535 | 501 | 0 | – | |
| ProSiteProfiles | 44 | 78 | 35 | 9.986 | ||
| Pfam | 47 | 74 | 28 | 0.002 | ||
| TIGRFAM | 47 | 79 | 33 | 0.0031 | ||
| ProSiteProfiles | 79 | 113 | 35 | 5.305 | ||
| ProSiteProfiles | 114 | 148 | 35 | 10.358 | ||
| Gene3D | 119 | 145 | 27 | 9.30E-08 | ||
| Pfam | 119 | 146 | 28 | 3.30E-04 | ||
| TIGRFAM | 120 | 147 | 28 | 0.0013 | ||
| TIGRFAM | 147 | 173 | 27 | 1.30E-04 | ||
| Pfam | 147 | 173 | 27 | 1.00E-05 | ||
| ProSiteProfiles | 149 | 175 | 27 | 5.338 | ||
| ProSiteProfiles | 224 | 254 | 31 | 7.147 | ||
| Pfam | 229 | 254 | 26 | 0.004 | ||
| TIGRFAM | 229 | 255 | 27 | 8.40E-04 | ||
| Gene3D | 253 | 390 | 138 | 9.30E-08 | ||
| ProSiteProfiles | 255 | 289 | 35 | 9.58 | ||
| Pfam | 255 | 303 | 49 | 1.80E-08 | ||
| TIGRFAM | 258 | 285 | 28 | 3.00E-04 | ||
| ProSiteProfiles | 291 | 325 | 35 | 5.941 | ||
| ProSiteProfiles | 326 | 356 | 31 | 9.405 | ||
| TIGRFAM | 331 | 359 | 29 | 3.10E-05 | ||
| Pfam | 356 | 403 | 48 | 2.50E-08 | ||
| ProSiteProfiles | 357 | 391 | 35 | 12.43 | ||
| TIGRFAM | 360 | 392 | 33 | 3.20E-07 | ||
| ProSiteProfiles | 392 | 422 | 31 | 7.563 | ||
| ProSiteProfiles | 428 | 458 | 31 | 7.059 | ||
| Pfam | 431 | 455 | 25 | 0.021 | ||
| Gene3D | 459 | 514 | 56 | 9.30E-08 | ||
| ProSiteProfiles | 494 | 528 | 35 | 6.928 | ||
| Pfam | 530 | 654 | 125 | 5.00E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v3904160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3904160.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.