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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3904270 |
| Transcript ID | Lj1g3v3904270.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357508407|ref|XP_003624492.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 31 | 31 | 0 | – | |
| PANTHER | 1 | 31 | 31 | 0 | – | |
| ProSiteProfiles | 45 | 75 | 31 | 5.777 | ||
| PANTHER | 63 | 344 | 282 | 0 | – | |
| PANTHER | 63 | 344 | 282 | 0 | – | |
| ProSiteProfiles | 76 | 106 | 31 | 10.15 | ||
| TIGRFAM | 80 | 107 | 28 | 1.20E-05 | ||
| Gene3D | 86 | 138 | 53 | 2.40E-11 | ||
| ProSiteProfiles | 107 | 141 | 35 | 12.54 | ||
| Pfam | 107 | 153 | 47 | 5.80E-12 | ||
| TIGRFAM | 109 | 142 | 34 | 1.10E-07 | ||
| ProSiteProfiles | 142 | 176 | 35 | 6.654 | ||
| ProSiteProfiles | 177 | 207 | 31 | 7.848 | ||
| TIGRFAM | 180 | 206 | 27 | 8.80E-04 | ||
| Pfam | 207 | 252 | 46 | 1.30E-09 | ||
| ProSiteProfiles | 208 | 242 | 35 | 12.299 | ||
| TIGRFAM | 210 | 244 | 35 | 6.00E-05 | ||
| ProSiteProfiles | 278 | 308 | 31 | 8.254 | ||
| Pfam | 283 | 307 | 25 | 0.014 | ||
| Gene3D | 307 | 336 | 30 | 2.40E-11 | ||
| ProSiteProfiles | 309 | 343 | 35 | 9.898 | ||
| Pfam | 311 | 336 | 26 | 1.30E-05 | ||
| TIGRFAM | 311 | 337 | 27 | 0.0024 | ||
| ProSiteProfiles | 379 | 409 | 31 | 6.106 | ||
| PANTHER | 380 | 690 | 311 | 0 | – | |
| PANTHER | 380 | 690 | 311 | 0 | – | |
| Gene3D | 404 | 427 | 24 | 2.40E-11 | ||
| ProSiteProfiles | 410 | 444 | 35 | 9.251 | ||
| Pfam | 413 | 441 | 29 | 1.70E-05 | ||
| TIGRFAM | 414 | 445 | 32 | 2.70E-04 | ||
| ProSiteProfiles | 445 | 479 | 35 | 6.401 | ||
| ProSiteProfiles | 480 | 510 | 31 | 8.714 | ||
| Gene3D | 483 | 554 | 72 | 2.40E-11 | ||
| Pfam | 485 | 510 | 26 | 0.0014 | ||
| TIGRFAM | 486 | 510 | 25 | 8.80E-04 | ||
| ProSiteProfiles | 511 | 545 | 35 | 12.485 | ||
| Pfam | 511 | 557 | 47 | 2.70E-09 | ||
| TIGRFAM | 513 | 547 | 35 | 3.80E-06 | ||
| ProSiteProfiles | 546 | 576 | 31 | 7.059 | ||
| ProSiteProfiles | 582 | 612 | 31 | 8.298 | ||
| TIGRFAM | 586 | 609 | 24 | 7.00E-04 | ||
| Pfam | 586 | 609 | 24 | 0.011 | ||
| Gene3D | 590 | 667 | 78 | 2.40E-11 | ||
| ProSiteProfiles | 649 | 683 | 35 | 8.473 | ||
| Pfam | 687 | 809 | 123 | 6.60E-37 | ||
| ProSiteProfiles | 695 | 730 | 36 | 5.514 | ||
| Coils | 709 | 729 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v3904270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3904270.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.