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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3963440 |
| Transcript ID | Lj1g3v3963440.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula] gi|124360677|gb|ABN08666.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 30 | 30 | – | – | |
| Phobius | 1 | 30 | 30 | – | – | |
| Phobius | 1 | 13 | 13 | – | – | |
| Phobius | 14 | 25 | 12 | – | – | |
| Phobius | 26 | 30 | 5 | – | – | |
| Phobius | 31 | 689 | 659 | – | – | |
| PANTHER | 32 | 154 | 123 | 1.20E-36 | – | |
| PANTHER | 32 | 154 | 123 | 1.20E-36 | – | |
| Gene3D | 60 | 153 | 94 | 3.80E-09 | ||
| SUPERFAMILY | 61 | 146 | 86 | 2.61E-10 | ||
| ProSiteProfiles | 71 | 148 | 78 | 10.207 | ||
| SMART | 72 | 144 | 73 | 0.0019 | ||
| CDD | 74 | 144 | 71 | 3.96E-07 | – | |
| Pfam | 76 | 119 | 44 | 7.70E-05 | ||
| PANTHER | 215 | 236 | 22 | 1.20E-36 | – | |
| PANTHER | 215 | 236 | 22 | 1.20E-36 | – | |
| Pfam | 251 | 350 | 100 | 7.00E-09 | ||
| PANTHER | 302 | 334 | 33 | 1.20E-36 | – | |
| PANTHER | 302 | 334 | 33 | 1.20E-36 | – | |
| MobiDBLite | 534 | 556 | 23 | – | – | |
| MobiDBLite | 665 | 689 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj1g3v3963440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3963440.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.