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Lj1g3v4081730.1

Overview

Field Value
Gene ID Lj1g3v4081730
Transcript ID Lj1g3v4081730.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Glycine max] gi|356571874|ref|XP_003554096.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 73 73 – –
PANTHER
PTHR21713
1 207 207 4.10E-130
IPR016641
PIRSF
PIRSF015901
27 207 181 1.10E-58
IPR016641
ProSiteProfiles
PS51151
60 125 66 17.695
IPR002715
SMART
SM01407
63 119 57 2.50E-25
IPR002715
Pfam
PF01849
63 118 56 6.00E-23
IPR002715
MobiDBLite
mobidb-lite
138 168 31 – –
Gene3D
G3DSA:1.10.8.10
167 206 40 5.00E-22 –
CDD
cd14358
170 206 37 1.06E-15 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005854
Cellular component Nascent polypeptide-associated complex A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v4081730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4081730.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.