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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4139410 |
| Transcript ID | Lj1g3v4139410.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357436395|ref|XP_003588473.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | – | – | |
| PANTHER | 11 | 48 | 38 | 0 | – | |
| PANTHER | 11 | 48 | 38 | 0 | – | |
| PANTHER | 72 | 250 | 179 | 0 | – | |
| PANTHER | 72 | 250 | 179 | 0 | – | |
| ProSiteProfiles | 85 | 115 | 31 | 6.61 | ||
| Pfam | 92 | 115 | 24 | 0.14 | ||
| Gene3D | 99 | 148 | 50 | 7.00E-08 | ||
| ProSiteProfiles | 116 | 146 | 31 | 7.75 | ||
| Pfam | 119 | 144 | 26 | 0.026 | ||
| ProSiteProfiles | 154 | 188 | 35 | 6.336 | ||
| ProSiteProfiles | 189 | 219 | 31 | 8.484 | ||
| Gene3D | 219 | 283 | 65 | 7.00E-08 | ||
| Pfam | 219 | 267 | 49 | 1.80E-08 | ||
| ProSiteProfiles | 220 | 254 | 35 | 10.939 | ||
| TIGRFAM | 222 | 255 | 34 | 1.40E-05 | ||
| ProSiteProfiles | 255 | 289 | 35 | 9.12 | ||
| PANTHER | 286 | 391 | 106 | 0 | – | |
| PANTHER | 286 | 391 | 106 | 0 | – | |
| ProSiteProfiles | 325 | 355 | 31 | 7.651 | ||
| Gene3D | 328 | 387 | 60 | 7.00E-08 | ||
| Pfam | 328 | 351 | 24 | 0.12 | ||
| ProSiteProfiles | 356 | 390 | 35 | 11.082 | ||
| TIGRFAM | 359 | 391 | 33 | 2.40E-07 | ||
| Pfam | 359 | 388 | 30 | 4.10E-08 | ||
| ProSiteProfiles | 391 | 425 | 35 | 12.266 | ||
| Pfam | 391 | 438 | 48 | 1.70E-10 | ||
| TIGRFAM | 393 | 427 | 35 | 1.50E-07 | ||
| ProSiteProfiles | 426 | 460 | 35 | 6.862 | ||
| Gene3D | 490 | 519 | 30 | 7.00E-08 | ||
| ProSiteProfiles | 492 | 526 | 35 | 11.959 | ||
| PANTHER | 493 | 806 | 314 | 0 | – | |
| PANTHER | 493 | 806 | 314 | 0 | – | |
| Pfam | 495 | 524 | 30 | 4.60E-07 | ||
| TIGRFAM | 495 | 527 | 33 | 1.50E-07 | ||
| ProSiteProfiles | 527 | 561 | 35 | 11.674 | ||
| Pfam | 527 | 574 | 48 | 3.60E-12 | ||
| TIGRFAM | 529 | 563 | 35 | 7.50E-08 | ||
| ProSiteProfiles | 562 | 596 | 35 | 5.711 | ||
| ProSiteProfiles | 597 | 627 | 31 | 5.261 | ||
| ProSiteProfiles | 628 | 662 | 35 | 9.065 | ||
| TIGRFAM | 630 | 664 | 35 | 2.30E-04 | ||
| Pfam | 630 | 657 | 28 | 5.20E-04 | ||
| ProSiteProfiles | 664 | 698 | 35 | 8.649 | ||
| Pfam | 666 | 695 | 30 | 0.63 | ||
| ProSiteProfiles | 699 | 729 | 31 | 7.245 | ||
| Pfam | 702 | 727 | 26 | 0.04 | ||
| ProSiteProfiles | 731 | 761 | 31 | 5.459 | ||
| ProSiteProfiles | 765 | 799 | 35 | 6.116 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v4139410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4139410.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.