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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4141650 |
| Transcript ID | Lj1g3v4141650.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Cicer arietinum] gi|502108158|ref|XP_004493401.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 94 | 94 | 1.00E-211 | – | |
| PANTHER | 1 | 94 | 94 | 1.00E-211 | – | |
| MobiDBLite | 1 | 40 | 40 | – | – | |
| MobiDBLite | 117 | 177 | 61 | – | – | |
| PANTHER | 166 | 461 | 296 | 1.00E-211 | – | |
| PANTHER | 166 | 461 | 296 | 1.00E-211 | – | |
| Gene3D | 167 | 219 | 53 | 8.90E-08 | – | |
| SMART | 172 | 235 | 64 | 6.20E-08 | ||
| ProSiteProfiles | 174 | 218 | 45 | 9.347 | ||
| SUPERFAMILY | 176 | 219 | 44 | 8.75E-07 | – | |
| CDD | 176 | 228 | 53 | 5.00E-22 | – | |
| Pfam | 176 | 216 | 41 | 1.20E-06 | ||
| ProSitePatterns | 179 | 194 | 16 | – | ||
| Coils | 195 | 222 | 28 | – | – | |
| Pfam | 258 | 333 | 76 | 2.60E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of Lj1g3v4141650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4141650.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.