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Lj1g3v4315340.2

Overview

Field Value
Gene ID Lj1g3v4315340
Transcript ID Lj1g3v4315340.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor HBP-1b(c1)-like isoform X1 [Cicer arietinum] gi|502109068|ref|XP_004493558.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 63 63 – –
PANTHER
PTHR22952
13 42 30 1.40E-230 –
PANTHER
PTHR22952:SF151
13 42 30 1.40E-230 –
PANTHER
PTHR22952
82 128 47 1.40E-230 –
PANTHER
PTHR22952:SF151
82 128 47 1.40E-230 –
MobiDBLite
mobidb-lite
91 204 114 – –
PANTHER
PTHR22952:SF151
144 165 22 1.40E-230 –
PANTHER
PTHR22952
144 165 22 1.40E-230 –
PANTHER
PTHR22952:SF151
195 251 57 1.40E-230 –
PANTHER
PTHR22952
195 251 57 1.40E-230 –
Gene3D
G3DSA:1.20.5.170
196 243 48 1.20E-08 –
SMART
SM00338
198 272 75 1.90E-06
IPR004827
ProSiteProfiles
PS50217
200 244 45 9.151
IPR004827
SUPERFAMILY
SSF57959
202 244 43 8.13E-07 –
Pfam
PF00170
202 235 34 1.70E-07
IPR004827
ProSitePatterns
PS00036
205 220 16 –
IPR004827
Coils
Coil
221 248 28 – –
PANTHER
PTHR22952:SF151
276 494 219 1.40E-230 –
PANTHER
PTHR22952
276 494 219 1.40E-230 –
Pfam
PF14144
294 368 75 6.10E-31
IPR025422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj1g3v4315340.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4315340.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.