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Lj1g3v4450420.1

Overview

Field Value
Gene ID Lj1g3v4450420
Transcript ID Lj1g3v4450420.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Glycine max] gi|356548297|ref|XP_003542539.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 – –
Phobius
CYTOPLASMIC_DOMAIN
1 273 273 – –
MobiDBLite
mobidb-lite
52 103 52 – –
PANTHER
PTHR10314:SF30
74 462 389 1.70E-213 –
PANTHER
PTHR10314
74 462 389 1.70E-213 –
TIGRFAM
TIGR01124
110 604 495 5.10E-203
IPR005787
CDD
cd01562
110 414 305 2.19E-128 –
SUPERFAMILY
SSF53686
113 459 347 3.01E-97
IPR001926
Pfam
PF00291
122 410 289 9.70E-78
IPR001926
ProSitePatterns
PS00165
146 159 14 –
IPR000634
Gene3D
G3DSA:3.40.50.1100
173 422 250 5.00E-78 –
Phobius
TRANSMEMBRANE
274 294 21 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
295 606 312 – –
Pfam
PF00585
423 512 90 1.40E-24
IPR001721
CDD
cd04906
432 515 84 3.18E-33 –
Gene3D
G3DSA:3.40.1020.10
433 605 173 2.80E-44 –
ProSiteProfiles
PS51672
433 504 72 14.747
IPR001721
SUPERFAMILY
SSF55021
513 604 92 2.75E-23 –
Pfam
PF00585
519 603 85 2.80E-24
IPR001721
CDD
cd04907
525 605 81 5.19E-37 –
ProSiteProfiles
PS51672
526 597 72 17.251
IPR001721

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004794
Molecular function L-threonine ammonia-lyase activity Catalysis of the reaction: L-threonine = 2-oxobutanoate + NH3.
Subterm of
GO:0006520
Biological process Cellular amino acid metabolic process The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
Subterm of
GO:0009097
Biological process Isoleucine biosynthetic process The chemical reactions and pathways resulting in the formation of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v4450420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4450420.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.