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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4467820 |
| Transcript ID | Lj1g3v4467820.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g61800-like [Glycine max] gi|356527575|ref|XP_003532384.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 490 | 478 | 1.90E-273 | – | |
| PANTHER | 13 | 490 | 478 | 1.90E-273 | – | |
| ProSiteProfiles | 78 | 112 | 35 | 6.862 | ||
| ProSiteProfiles | 113 | 147 | 35 | 6.895 | ||
| ProSiteProfiles | 148 | 178 | 31 | 6.697 | ||
| Pfam | 151 | 174 | 24 | 0.055 | ||
| Pfam | 178 | 209 | 32 | 3.10E-08 | ||
| Gene3D | 179 | 396 | 218 | 1.70E-04 | ||
| ProSiteProfiles | 179 | 209 | 31 | 11.323 | ||
| TIGRFAM | 181 | 210 | 30 | 2.20E-08 | ||
| ProSiteProfiles | 210 | 244 | 35 | 11.871 | ||
| Pfam | 210 | 257 | 48 | 6.80E-09 | ||
| TIGRFAM | 212 | 245 | 34 | 3.40E-07 | ||
| ProSiteProfiles | 245 | 279 | 35 | 8.068 | ||
| ProSiteProfiles | 280 | 310 | 31 | 6.665 | ||
| Pfam | 286 | 306 | 21 | 0.33 | ||
| ProSiteProfiles | 311 | 345 | 35 | 10.501 | ||
| TIGRFAM | 313 | 346 | 34 | 3.00E-04 | ||
| Pfam | 313 | 342 | 30 | 0.0015 | ||
| ProSiteProfiles | 346 | 380 | 35 | 8.188 | ||
| Pfam | 349 | 374 | 26 | 0.0057 | ||
| ProSiteProfiles | 382 | 416 | 35 | 7.333 | ||
| Pfam | 386 | 412 | 27 | 0.1 | ||
| Gene3D | 429 | 469 | 41 | 1.70E-04 | ||
| ProSiteProfiles | 448 | 482 | 35 | 5.316 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v4467820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4467820.1, powered by CORGI.
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