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Lj1g3v4515690.1

Overview

Field Value
Gene ID Lj1g3v4515690
Transcript ID Lj1g3v4515690.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max] gi|356503624|ref|XP_003520607.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23083
39 725 687 0 –
PANTHER
PTHR23083:SF446
39 725 687 0 –
MobiDBLite
mobidb-lite
41 70 30 – –
Gene3D
G3DSA:1.25.40.10
59 184 126 3.10E-07
IPR011990
SMART
SM00028
151 184 34 96
IPR019734
Gene3D
G3DSA:1.25.40.10
336 417 82 3.10E-07
IPR011990
SUPERFAMILY
SSF48452
336 385 50 4.93E-08
IPR011990
SUPERFAMILY
SSF48452
437 558 122 4.93E-08
IPR011990
Gene3D
G3DSA:1.25.40.10
441 720 280 3.60E-29
IPR011990
ProSiteProfiles
PS50005
458 491 34 5.989
IPR019734
SMART
SM00028
458 491 34 210
IPR019734
SMART
SM00028
493 526 34 230
IPR019734
SUPERFAMILY
SSF48452
531 719 189 3.80E-16
IPR011990
ProSiteProfiles
PS50293
585 722 138 15.593
IPR013026
SMART
SM00028
585 618 34 69
IPR019734
ProSiteProfiles
PS50005
619 652 34 10.06
IPR019734
SMART
SM00028
619 652 34 0.02
IPR019734
Pfam
PF13181
620 651 32 0.0015
IPR019734
SMART
SM00028
689 722 34 0.056
IPR019734
Pfam
PF13181
689 720 32 0.0055
IPR019734
ProSiteProfiles
PS50005
689 722 34 9.588
IPR019734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj1g3v4515690.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4515690.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.