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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4692790 |
| Transcript ID | Lj1g3v4692790.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g03800-like isoform X1 [Cicer arietinum] gi|502111642|ref|XP_004494120.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 26 | 16 | 0 | – | |
| PANTHER | 11 | 26 | 16 | 0 | – | |
| PANTHER | 42 | 342 | 301 | 0 | – | |
| PANTHER | 42 | 342 | 301 | 0 | – | |
| ProSiteProfiles | 109 | 143 | 35 | 8.342 | ||
| Pfam | 111 | 138 | 28 | 0.075 | ||
| ProSiteProfiles | 145 | 179 | 35 | 5.053 | ||
| ProSiteProfiles | 180 | 214 | 35 | 9.558 | ||
| TIGRFAM | 185 | 212 | 28 | 4.50E-05 | ||
| Pfam | 211 | 258 | 48 | 2.10E-07 | ||
| ProSiteProfiles | 247 | 281 | 35 | 6.73 | ||
| ProSiteProfiles | 282 | 312 | 31 | 6.785 | ||
| Pfam | 287 | 312 | 26 | 0.092 | ||
| ProSiteProfiles | 313 | 343 | 31 | 9.635 | ||
| Gene3D | 313 | 396 | 84 | 2.90E-05 | ||
| TIGRFAM | 315 | 344 | 30 | 0.0028 | ||
| Pfam | 343 | 390 | 48 | 4.00E-10 | ||
| ProSiteProfiles | 344 | 378 | 35 | 11.608 | ||
| TIGRFAM | 346 | 379 | 34 | 9.40E-07 | ||
| PANTHER | 409 | 728 | 320 | 0 | – | |
| PANTHER | 409 | 728 | 320 | 0 | – | |
| ProSiteProfiles | 414 | 444 | 31 | 5.656 | ||
| Pfam | 420 | 441 | 22 | 0.79 | ||
| ProSiteProfiles | 447 | 481 | 35 | 9.679 | ||
| TIGRFAM | 449 | 472 | 24 | 4.90E-05 | ||
| Gene3D | 450 | 477 | 28 | 2.90E-05 | ||
| Pfam | 450 | 475 | 26 | 2.30E-06 | ||
| ProSiteProfiles | 482 | 516 | 35 | 6.632 | ||
| Gene3D | 514 | 575 | 62 | 2.90E-05 | ||
| ProSiteProfiles | 517 | 547 | 31 | 8.068 | ||
| TIGRFAM | 522 | 550 | 29 | 6.80E-05 | ||
| Pfam | 522 | 547 | 26 | 9.00E-04 | ||
| ProSiteProfiles | 548 | 582 | 35 | 12.299 | ||
| Pfam | 548 | 594 | 47 | 1.80E-11 | ||
| TIGRFAM | 550 | 583 | 34 | 3.10E-08 | ||
| ProSiteProfiles | 583 | 615 | 33 | 5.393 | ||
| ProSiteProfiles | 621 | 651 | 31 | 6.588 | ||
| Pfam | 624 | 648 | 25 | 0.0099 | ||
| Gene3D | 681 | 705 | 25 | 2.90E-05 | ||
| ProSiteProfiles | 687 | 721 | 35 | 8.331 | ||
| Pfam | 725 | 846 | 122 | 1.20E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v4692790.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4692790.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.