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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4703040 |
| Transcript ID | Lj1g3v4703040.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Xylem serine proteinase [Medicago truncatula] gi|357510987|ref|XP_003625782.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 29 | 29 | – | – | |
| Phobius | 1 | 12 | 12 | – | – | |
| Phobius | 1 | 29 | 29 | – | – | |
| SUPERFAMILY | 6 | 157 | 152 | 6.67E-11 | ||
| PANTHER | 8 | 165 | 158 | 1.00E-82 | ||
| PANTHER | 8 | 165 | 158 | 1.00E-82 | – | |
| TMHMM | 13 | 30 | 18 | – | – | |
| Phobius | 13 | 23 | 11 | – | – | |
| Phobius | 24 | 29 | 6 | – | – | |
| Phobius | 30 | 165 | 136 | – | – | |
| Pfam | 36 | 115 | 80 | 5.70E-14 | ||
| Gene3D | 91 | 157 | 67 | 1.40E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of Lj1g3v4703040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4703040.1, powered by CORGI.
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