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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4717280 |
| Transcript ID | Lj1g3v4717280.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Cicer arietinum] gi|502111819|ref|XP_004494174.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 343 | 343 | 3.80E-193 | – | |
| PANTHER | 1 | 343 | 343 | 3.80E-193 | – | |
| SUPERFAMILY | 4 | 338 | 335 | 2.32E-69 | ||
| SMART | 5 | 50 | 46 | 4.30E-09 | ||
| Hamap | 6 | 342 | 337 | 26.346 | ||
| Gene3D | 7 | 43 | 37 | 1.70E-05 | ||
| CDD | 8 | 339 | 332 | 1.23E-68 | – | |
| Pfam | 8 | 49 | 42 | 1.50E-05 | ||
| ProSiteProfiles | 12 | 343 | 332 | 48.248 | ||
| ProSiteProfiles | 12 | 50 | 39 | 10.408 | ||
| PRINTS | 37 | 51 | 15 | 1.50E-06 | ||
| Gene3D | 44 | 342 | 299 | 3.10E-71 | ||
| SMART | 57 | 97 | 41 | 1.60E-06 | ||
| Pfam | 61 | 96 | 36 | 0.0024 | ||
| ProSiteProfiles | 65 | 97 | 33 | 12.012 | ||
| ProSitePatterns | 84 | 98 | 15 | – | ||
| SMART | 102 | 141 | 40 | 6.20E-11 | ||
| Pfam | 104 | 140 | 37 | 2.40E-08 | ||
| ProSiteProfiles | 109 | 143 | 35 | 14.719 | ||
| ProSitePatterns | 128 | 142 | 15 | – | ||
| PRINTS | 128 | 142 | 15 | 1.50E-06 | ||
| SMART | 147 | 186 | 40 | 3.50E-09 | ||
| Pfam | 149 | 185 | 37 | 1.90E-06 | ||
| ProSiteProfiles | 154 | 185 | 32 | 14.118 | ||
| SMART | 193 | 236 | 44 | 5.70E-06 | ||
| Pfam | 194 | 235 | 42 | 1.60E-05 | ||
| ProSiteProfiles | 204 | 245 | 42 | 12.213 | ||
| ProSitePatterns | 223 | 237 | 15 | – | ||
| SMART | 248 | 287 | 40 | 0.2 | ||
| SMART | 294 | 339 | 46 | 6.50E-07 | ||
| ProSiteProfiles | 306 | 343 | 38 | 14.352 | ||
| Pfam | 307 | 338 | 32 | 1.60E-04 | ||
| ProSitePatterns | 326 | 340 | 15 | – | ||
| PRINTS | 326 | 340 | 15 | 1.50E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Iron-sulfur cluster assembly | The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. | ||
| Cellular component | CIA complex | The cytosolic iron-sulfur protein assembly (CIA) complex mediates the incorporation of iron-sulfur clusters into apoproteins involved in DNA metabolism and genomic integrity. |
Expression pattern of Lj1g3v4717280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4717280.1, powered by CORGI.
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