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Lj1g3v4740410.2

Overview

Field Value
Gene ID Lj1g3v4740410
Transcript ID Lj1g3v4740410.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: high mobility group B protein 10-like [Cicer arietinum] gi|502117956|ref|XP_004496029.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51011
1 99 99 13.219
IPR001606
SMART
SM01014
12 95 84 1.70E-08 –
SUPERFAMILY
SSF46774
13 100 88 3.66E-16
IPR001606
PANTHER
PTHR22970:SF24
16 107 92 4.20E-43 –
PANTHER
PTHR22970
16 107 92 4.20E-43 –
SMART
SM00501
16 100 85 1.40E-04
IPR001606
Pfam
PF01388
21 95 75 1.50E-10
IPR001606
Gene3D
G3DSA:1.10.150.60
40 104 65 1.00E-13
IPR001606
MobiDBLite
mobidb-lite
111 140 30 – –
SUPERFAMILY
SSF47095
122 202 81 1.70E-12
IPR009071
Gene3D
G3DSA:1.10.30.10
131 217 87 2.10E-11
IPR009071
ProSiteProfiles
PS50118
137 206 70 10.801
IPR009071
Pfam
PF09011
137 203 67 8.30E-07
IPR009071
MobiDBLite
mobidb-lite
184 234 51 – –
Coils
Coil
188 215 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v4740410.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4740410.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.