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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4753240 |
| Transcript ID | Lj1g3v4753240.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Cicer arietinum] gi|502112296|ref|XP_004494285.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 40 | 491 | 452 | 0 | – | |
| PANTHER | 40 | 491 | 452 | 0 | – | |
| ProSiteProfiles | 80 | 114 | 35 | 9.164 | ||
| Pfam | 83 | 111 | 29 | 0.86 | ||
| ProSiteProfiles | 115 | 149 | 35 | 5.634 | ||
| ProSiteProfiles | 150 | 180 | 31 | 6.478 | ||
| ProSiteProfiles | 181 | 211 | 31 | 11.356 | ||
| Pfam | 183 | 211 | 29 | 6.20E-08 | ||
| TIGRFAM | 183 | 213 | 31 | 4.10E-05 | ||
| ProSiteProfiles | 212 | 246 | 35 | 12.057 | ||
| Pfam | 214 | 244 | 31 | 3.50E-08 | ||
| TIGRFAM | 214 | 247 | 34 | 4.50E-09 | ||
| ProSiteProfiles | 247 | 281 | 35 | 5.174 | ||
| ProSiteProfiles | 282 | 312 | 31 | 9.043 | ||
| Gene3D | 285 | 343 | 59 | 4.50E-06 | ||
| TIGRFAM | 287 | 314 | 28 | 1.10E-04 | ||
| Pfam | 312 | 360 | 49 | 1.60E-10 | ||
| ProSiteProfiles | 313 | 347 | 35 | 11.816 | ||
| TIGRFAM | 316 | 347 | 32 | 3.20E-07 | ||
| ProSiteProfiles | 348 | 383 | 36 | 8.046 | ||
| TIGRFAM | 350 | 383 | 34 | 1.00E-04 | ||
| Gene3D | 376 | 411 | 36 | 4.50E-06 | ||
| ProSiteProfiles | 384 | 418 | 35 | 7.75 | ||
| Pfam | 387 | 412 | 26 | 0.028 | ||
| Gene3D | 444 | 469 | 26 | 4.50E-06 | ||
| ProSiteProfiles | 450 | 484 | 35 | 6.632 | ||
| Pfam | 486 | 610 | 125 | 2.10E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v4753240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4753240.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.