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Lj1g3v4763830.1

Overview

Field Value
Gene ID Lj1g3v4763830
Transcript ID Lj1g3v4763830.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Glycine max] gi|356524672|ref|XP_003530952.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 62 62 – –
Hamap
MF_03002
2 862 861 46.498
IPR027516
PANTHER
PTHR13937:SF0
2 859 858 0 –
PANTHER
PTHR13937
2 859 858 0 –
Pfam
PF05470
42 651 610 4.50E-242
IPR008905
MobiDBLite
mobidb-lite
134 231 98 – –
Coils
Coil
144 171 28 – –
Pfam
PF01399
659 787 129 2.80E-17
IPR000717
SUPERFAMILY
SSF46785
715 789 75 4.35E-12
IPR011991
Gene3D
G3DSA:1.10.10.10
717 788 72 9.20E-12
IPR011991
SMART
SM00088
720 806 87 1.70E-18
IPR000717
SMART
SM00753
720 806 87 1.70E-18 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0005852
Cellular component Eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of
GO:0031369
Molecular function Translation initiation factor binding Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v4763830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4763830.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.