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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4863120 |
| Transcript ID | Lj1g3v4863120.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase-like protein D5-like [Glycine max] gi|356505610|ref|XP_003521583.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 309 | 309 | – | – | |
| MobiDBLite | 1 | 86 | 86 | – | – | |
| SignalP | 1 | 11 | 11 | – | – | |
| Gene3D | 155 | 224 | 70 | 1.20E-09 | ||
| SUPERFAMILY | 159 | 210 | 52 | 2.96E-05 | – | |
| PANTHER | 160 | 527 | 368 | 0 | – | |
| PANTHER | 160 | 527 | 368 | 0 | – | |
| Pfam | 164 | 208 | 45 | 2.00E-08 | – | |
| MobiDBLite | 212 | 234 | 23 | – | – | |
| Phobius | 310 | 335 | 26 | – | – | |
| Phobius | 336 | 346 | 11 | – | – | |
| Phobius | 347 | 366 | 20 | – | – | |
| Phobius | 367 | 951 | 585 | – | – | |
| Pfam | 405 | 1172 | 768 | 0 | ||
| SUPERFAMILY | 420 | 465 | 46 | 1.59E-07 | ||
| PANTHER | 557 | 761 | 205 | 0 | – | |
| PANTHER | 557 | 761 | 205 | 0 | – | |
| SUPERFAMILY | 624 | 744 | 121 | 1.59E-07 | ||
| PANTHER | 784 | 1168 | 385 | 0 | – | |
| PANTHER | 784 | 1168 | 385 | 0 | – | |
| SUPERFAMILY | 881 | 970 | 90 | 1.59E-07 | ||
| Phobius | 952 | 975 | 24 | – | – | |
| TMHMM | 956 | 978 | 23 | – | – | |
| Phobius | 976 | 986 | 11 | – | – | |
| Phobius | 987 | 1008 | 22 | – | – | |
| TMHMM | 991 | 1010 | 20 | – | – | |
| Phobius | 1009 | 1085 | 77 | – | – | |
| TMHMM | 1025 | 1047 | 23 | – | – | |
| TMHMM | 1078 | 1100 | 23 | – | – | |
| Phobius | 1086 | 1105 | 20 | – | – | |
| Phobius | 1106 | 1110 | 5 | – | – | |
| TMHMM | 1110 | 1132 | 23 | – | – | |
| Phobius | 1111 | 1132 | 22 | – | – | |
| Phobius | 1133 | 1143 | 11 | – | – | |
| Phobius | 1144 | 1164 | 21 | – | – | |
| TMHMM | 1145 | 1164 | 20 | – | – | |
| Phobius | 1165 | 1180 | 16 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj1g3v4863120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4863120.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.