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Lj1g3v4916290.1

Overview

Field Value
Gene ID Lj1g3v4916290
Transcript ID Lj1g3v4916290.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cullin-1-like [Cicer arietinum] gi|502112494|ref|XP_004494349.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50069
1 202 202 41.934
IPR016158
PANTHER
PTHR11932
2 327 326 4.60E-224 –
Gene3D
G3DSA:1.20.1310.10
2 78 77 1.50E-24 –
PANTHER
PTHR11932:SF84
2 327 326 4.60E-224 –
Pfam
PF00888
2 230 229 1.80E-76
IPR001373
SUPERFAMILY
SSF75632
2 243 242 4.97E-75
IPR016158
SMART
SM00182
2 152 151 1.10E-55
IPR016158
Gene3D
G3DSA:4.10.1030.10
93 161 69 2.50E-24 –
Gene3D
G3DSA:1.10.10.10
162 229 68 5.00E-19
IPR011991
Gene3D
G3DSA:1.10.10.10
230 327 98 1.20E-32
IPR011991
SUPERFAMILY
SSF46785
240 327 88 3.54E-27
IPR011991
SMART
SM00884
254 321 68 1.60E-31
IPR019559
Pfam
PF10557
257 319 63 2.10E-25
IPR019559

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0031625
Molecular function Ubiquitin protein ligase binding Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v4916290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4916290.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.