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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4921060 |
| Transcript ID | Lj1g3v4921060.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Trypsin family protein with PDZ domain isoform 4 [Theobroma cacao] gi|508719584|gb|EOY11481.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | – | – | |
| Phobius | 1 | 32 | 32 | – | – | |
| Phobius | 16 | 27 | 12 | – | – | |
| Phobius | 28 | 32 | 5 | – | – | |
| Phobius | 33 | 284 | 252 | – | – | |
| PANTHER | 64 | 275 | 212 | 9.40E-118 | – | |
| PANTHER | 64 | 275 | 212 | 9.40E-118 | – | |
| SUPERFAMILY | 69 | 270 | 202 | 1.37E-53 | ||
| Gene3D | 97 | 172 | 76 | 1.40E-25 | – | |
| Pfam | 99 | 239 | 141 | 7.90E-32 | – | |
| PRINTS | 108 | 120 | 13 | 2.90E-28 | ||
| PRINTS | 131 | 151 | 21 | 2.90E-28 | ||
| PRINTS | 172 | 196 | 25 | 2.90E-28 | ||
| Gene3D | 173 | 276 | 104 | 4.30E-34 | – | |
| PRINTS | 210 | 227 | 18 | 2.90E-28 | ||
| PRINTS | 232 | 249 | 18 | 2.90E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of Lj1g3v4921060.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4921060.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.