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IPR001940 is a Peptidase S1C.
<p>This group of serine peptidases and non-peptidase homologues belong to the MEROPS peptidase family S1, subfamily S1C (protease Do subfamily, clan PS(S)). A type example is the protease Do from Escherichia coli.</p> <p>This entry also includes the membrane transporter protein MamO and the magnetosome formation protease MamE. MamO promotes magnetite nucleation/formation and activates the MamE protease [[cite:PUB00093597], [cite:PUB00093599]]. MamE is required for correct localization of proteins to the magnetosome while the protease activity is required for maturation of small magnetite crystals into larger, functional ones [[cite:PUB00093599]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: protease Do-like 2, chloroplastic-like [Cicer arietinum] gi|502117892|ref|XP_004495997.1| | 19 | ||
| – | Trypsin family protein with PDZ domain isoform 2, partial [Theobroma cacao] gi|508719582|gb|EOY11479.1| | 22 | ||
| – | Os11g0246600 [Oryza sativa Japonica Group] gi|297611567|ref|NP_001067609.2| | 14 | ||
| – | Trypsin family protein with PDZ domain isoform 4 [Theobroma cacao] gi|508719584|gb|EOY11481.1| | 13 | ||
| – | PREDICTED: protease Do-like 1, chloroplastic-like [Cicer arietinum] gi|502090590|ref|XP_004489277.1| | 21 | ||
| – | PREDICTED: protease Do-like 8, chloroplastic-like [Glycine max] gi|356550813|ref|XP_003543778.1| | 15 | ||
| – | PREDICTED: protease Do-like 9-like [Cicer arietinum] gi|502152268|ref|XP_004508846.1| | 17 | ||
| – | PREDICTED: protease Do-like 5, chloroplastic-like [Glycine max] gi|356546506|ref|XP_003541667.1| | 10 | ||
| – | Serine protease; TAIR: AT5G27660.2 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771600 | 24 | ||
| – | Serine protease; TAIR: AT5G27660.2 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771600 | 24 | ||
| – | Serine protease; TAIR: AT5G27660.1 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771700_LC | 14 | ||
| – | Serine protease; TAIR: AT5G27660.2 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771700_LC | 15 | ||
| – | Serine protease; TAIR: AT5G36950.1 DegP protease 10; Swiss-Prot: sp|Q9FIV6|DGP10_ARATH Protease Do-like 10, mitochondrial; TrEMBL-Plants: tr|I1KZS0|I1KZS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0236200 | 18 | ||
| – | Serine protease; TAIR: AT3G27925.1 DegP protease 1; Swiss-Prot: sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic; TrEMBL-Plants: tr|I3S8D7|I3S8D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0246100 | 23 | ||
| – | Serine protease; TAIR: AT3G27925.1 DegP protease 1; Swiss-Prot: sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic; TrEMBL-Plants: tr|I3S8D7|I3S8D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0246100 | 23 | ||
| – | Serine protease; TAIR: AT5G39830.1 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic; TrEMBL-Plants: tr|I3S3D5|I3S3D5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0259100 | 17 | ||
| – | Serine protease; TAIR: AT5G39830.1 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic; TrEMBL-Plants: tr|I3S3D5|I3S3D5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0259100 | 23 | ||
| – | Protease-like protein; TAIR: AT5G40200.1 DegP protease 9; Swiss-Prot: sp|Q9FL12|DEGP9_ARATH Protease Do-like 9; TrEMBL-Plants: tr|I1MTJ7|I1MTJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0238700 | 21 | ||
| – | Protease-like protein; TAIR: AT2G47940.1 DEGP protease 2; Swiss-Prot: sp|O82261|DEGP2_ARATH Protease Do-like 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TWQ0|A0A0L9TWQ0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0262000 | 21 | ||
| – | DegP protease-like protein; TAIR: AT3G03380.1 DegP protease 7; Swiss-Prot: sp|Q8RY22|DEGP7_ARATH Protease Do-like 7; TrEMBL-Plants: tr|I1LME4|I1LME4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060100 | 20 | ||
| – | DegP protease-like protein; TAIR: AT3G03380.1 DegP protease 7; Swiss-Prot: sp|Q8RY22|DEGP7_ARATH Protease Do-like 7; TrEMBL-Plants: tr|I1LME4|I1LME4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060100 | 20 | ||
| – | Serine protease; TAIR: AT4G18370.1 DEGP protease 5; Swiss-Prot: sp|Q9SEL7|DEGP5_ARATH Protease Do-like 5, chloroplastic; TrEMBL-Plants: tr|I3SH86|I3SH86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0311000 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SignalP-TM | SignalP_GRAM_NEGATIVE | 1 | 4.55 |