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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009003
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 40 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.357s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0008879.1
n.a. PREDICTED: protease Do-like 5, chloroplastic-like [Glycine max] gi|356546506|ref|XP_003541667.1| chr0 3603869 3606364 +
2 domain predictions
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Lj0g3v0181429.1
n.a. PREDICTED: protease Do-like 2, chloroplastic-like [Cicer arietinum] gi|502117892|ref|XP_004495997.1| chr0 88498220 88506911 -
2 domain predictions
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Lj0g3v0243219.1
n.a. Protease Do-like protein [Medicago truncatula] gi|357447247|ref|XP_003593899.1| chr0 126131130 126133654 -
2 domain predictions
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Lj1g3v3557090.1
n.a. Uncharacterized protein TCM_002847 [Theobroma cacao] gi|508701969|gb|EOX93865.1| chr1 40891110 40896352 -
2 domain predictions
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Lj1g3v4921060.1
n.a. Trypsin family protein with PDZ domain isoform 2, partial [Theobroma cacao] gi|508719582|gb|EOY11479.1| chr1 59814132 59819151 +
2 domain predictions
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Lj1g3v4921060.2
n.a. Os11g0246600 [Oryza sativa Japonica Group] gi|297611567|ref|NP_001067609.2| chr1 59816406 59819151 +
2 domain predictions
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Lj1g3v4921060.3
n.a. Trypsin family protein with PDZ domain isoform 4 [Theobroma cacao] gi|508719584|gb|EOY11481.1| chr1 59822071 59825924 +
2 domain predictions
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Lj2g3v1012780.1
n.a. PREDICTED: protease Do-like 1, chloroplastic-like [Cicer arietinum] gi|502090590|ref|XP_004489277.1| chr2 15370065 15382701 -
2 domain predictions
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Lj2g3v1058040.2
n.a. PREDICTED: protease Do-like 8, chloroplastic-like [Glycine max] gi|356550813|ref|XP_003543778.1| chr2 16770745 16775367 +
2 domain predictions
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Lj3g3v0965930.1
n.a. Trypsin family protein [Theobroma cacao] gi|508721886|gb|EOY13783.1| chr3 12891554 12896704 -
2 domain predictions
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Lj4g3v0654610.1
n.a. Peptidase, trypsin-like serine and cysteine proteases [Medicago truncatula] gi|124301256|gb|ABN04842.1| chr4 10669059 10676313 +
2 domain predictions
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Lj4g3v1535190.1
n.a. PREDICTED: protease Do-like 9-like [Cicer arietinum] gi|502152268|ref|XP_004508846.1| chr4 23062185 23068503 -
2 domain predictions
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Lj6g3v0436140.1
n.a. PREDICTED: protease Do-like 7-like [Glycine max] gi|356539842|ref|XP_003538402.1| chr6 4146791 4167687 +
2 domain predictions
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Lj6g3v1946370.1
n.a. PREDICTED: protease Do-like 5, chloroplastic-like [Glycine max] gi|356546506|ref|XP_003541667.1| chr6 22191237 22195109 +
2 domain predictions
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Lj6g3v1946370.2
n.a. PREDICTED: protease Do-like 5, chloroplastic-like [Glycine max] gi|356546506|ref|XP_003541667.1| chr6 22191237 22195109 +
2 domain predictions
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Lj6g3v2017430.1
n.a. PREDICTED: glyoxysomal processing protease, glyoxysomal-like [Glycine max] gi|356546634|ref|XP_003541729.1| chr6 23780578 23783679 +
2 domain predictions
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LotjaGi1g1v0590300.1
n.a. Trypsin-like cysteine/serine peptidase domain-containing protein; TAIR: AT3G07210.1 hypothetical protein; Swiss-Prot: sp|P55440|Y4FB_SINFN Uncharacterized protein y4fB; TrEMBL-Plants: tr|A0A0L9U4V2|A0A0L9U4V2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0590300 LjG1.1_chr1 113011615 113023163 -
2 domain predictions
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LotjaGi1g1v0590300.2
n.a. Trypsin-like cysteine/serine peptidase domain-containing protein; TAIR: AT3G07210.1 hypothetical protein; Swiss-Prot: sp|P55440|Y4FB_SINFN Uncharacterized protein y4fB; TrEMBL-Plants: tr|A0A0L9U4V2|A0A0L9U4V2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0590300 LjG1.1_chr1 113018441 113022911 -
2 domain predictions
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LotjaGi1g1v0771600.1
n.a. Serine protease; TAIR: AT5G27660.2 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771600 LjG1.1_chr1 134423275 134428629 +
2 domain predictions
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LotjaGi1g1v0771600.2
n.a. Serine protease; TAIR: AT5G27660.2 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771600 LjG1.1_chr1 134423275 134428629 +
2 domain predictions
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LotjaGi1g1v0771700_LC.1
n.a. Serine protease; TAIR: AT5G27660.1 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771700_LC LjG1.1_chr1 134431558 134436317 +
2 domain predictions
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LotjaGi1g1v0771700_LC.2
n.a. Serine protease; TAIR: AT5G27660.2 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771700_LC LjG1.1_chr1 134431558 134436317 +
2 domain predictions
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LotjaGi2g1v0236200.1
n.a. Serine protease; TAIR: AT5G36950.1 DegP protease 10; Swiss-Prot: sp|Q9FIV6|DGP10_ARATH Protease Do-like 10, mitochondrial; TrEMBL-Plants: tr|I1KZS0|I1KZS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0236200 LjG1.1_chr2 69683282 69688655 +
2 domain predictions
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LotjaGi2g1v0246100.1
n.a. Serine protease; TAIR: AT3G27925.1 DegP protease 1; Swiss-Prot: sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic; TrEMBL-Plants: tr|I3S8D7|I3S8D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0246100 LjG1.1_chr2 71150421 71157784 -
2 domain predictions
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LotjaGi2g1v0246100.2
n.a. Serine protease; TAIR: AT3G27925.1 DegP protease 1; Swiss-Prot: sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic; TrEMBL-Plants: tr|I3S8D7|I3S8D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0246100 LjG1.1_chr2 71150764 71155263 -
2 domain predictions
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LotjaGi2g1v0259100.1
n.a. Serine protease; TAIR: AT5G39830.1 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic; TrEMBL-Plants: tr|I3S3D5|I3S3D5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0259100 LjG1.1_chr2 72661064 72665809 +
2 domain predictions
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LotjaGi2g1v0259100.2
n.a. Serine protease; TAIR: AT5G39830.1 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic; TrEMBL-Plants: tr|I3S3D5|I3S3D5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0259100 LjG1.1_chr2 72661424 72665629 +
2 domain predictions
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LotjaGi3g1v0140000.1
n.a. Trypsin family protein; TAIR: AT5G45030.1 Trypsin family protein; Swiss-Prot: sp|Q573E5|Y107_AFV2P Uncharacterized protein ORF107; TrEMBL-Plants: tr|I1MJ67|I1MJ67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0140000 LjG1.1_chr3 18523865 18529378 -
2 domain predictions
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LotjaGi3g1v0140000.2
n.a. Trypsin family protein; TAIR: AT5G45030.1 Trypsin family protein; Swiss-Prot: sp|Q573E5|Y107_AFV2P Uncharacterized protein ORF107; TrEMBL-Plants: tr|I1MJ67|I1MJ67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0140000 LjG1.1_chr3 18524389 18528122 -
2 domain predictions
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LotjaGi4g1v0084000.1
n.a. Trypsin family protein; TAIR: AT5G45030.1 Trypsin family protein; Swiss-Prot: sp|A4H8F7|TRM5_LEIBR tRNA (guanine(37)-N1)-methyltransferase; TrEMBL-Plants: tr|A0A151UAS5|A0A151UAS5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0084000 LjG1.1_chr4 11038363 11046373 +
2 domain predictions
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LotjaGi4g1v0084000.2
n.a. Trypsin family protein; TAIR: AT5G45030.1 Trypsin family protein; Swiss-Prot: sp|A4H8F7|TRM5_LEIBR tRNA (guanine(37)-N1)-methyltransferase; TrEMBL-Plants: tr|A0A151UAS5|A0A151UAS5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0084000 LjG1.1_chr4 11039320 11045584 +
2 domain predictions
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LotjaGi4g1v0238700.1
n.a. protease-like protein; TAIR: AT5G40200.1 DegP protease 9; Swiss-Prot: sp|Q9FL12|DEGP9_ARATH Protease Do-like 9; TrEMBL-Plants: tr|I1MTJ7|I1MTJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0238700 LjG1.1_chr4 55470852 55479016 +
2 domain predictions
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LotjaGi5g1v0262000.1
n.a. protease-like protein; TAIR: AT2G47940.1 DEGP protease 2; Swiss-Prot: sp|O82261|DEGP2_ARATH Protease Do-like 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TWQ0|A0A0L9TWQ0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0262000 LjG1.1_chr5 57075940 57085236 +
2 domain predictions
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LotjaGi6g1v0060100.1
n.a. DegP protease-like protein; TAIR: AT3G03380.1 DegP protease 7; Swiss-Prot: sp|Q8RY22|DEGP7_ARATH Protease Do-like 7; TrEMBL-Plants: tr|I1LME4|I1LME4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060100 LjG1.1_chr6 10953369 10980005 +
2 domain predictions
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LotjaGi6g1v0060100.2
n.a. DegP protease-like protein; TAIR: AT3G03380.1 DegP protease 7; Swiss-Prot: sp|Q8RY22|DEGP7_ARATH Protease Do-like 7; TrEMBL-Plants: tr|I1LME4|I1LME4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060100 LjG1.1_chr6 10953662 10974112 +
2 domain predictions
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LotjaGi6g1v0272800_LC.2
n.a. Protease Do-like protein; TAIR: AT4G18370.1 DEGP protease 5; Swiss-Prot: sp|Q9SEL7|DEGP5_ARATH Protease Do-like 5, chloroplastic; TrEMBL-Plants: tr|I3SH86|I3SH86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0272800_LC LjG1.1_chr6 58868847 58871495 +
2 domain predictions
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LotjaGi6g1v0272800_LC.3
n.a. Protease Do-like protein; TAIR: AT4G18370.1 DEGP protease 5; Swiss-Prot: sp|Q9SEL7|DEGP5_ARATH Protease Do-like 5, chloroplastic; TrEMBL-Plants: tr|I3SH86|I3SH86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0272800_LC LjG1.1_chr6 58868865 58871480 +
2 domain predictions
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LotjaGi6g1v0311000.1
n.a. Serine protease; TAIR: AT4G18370.1 DEGP protease 5; Swiss-Prot: sp|Q9SEL7|DEGP5_ARATH Protease Do-like 5, chloroplastic; TrEMBL-Plants: tr|I3SH86|I3SH86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0311000 LjG1.1_chr6 62958675 62962683 +
2 domain predictions
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LotjaGi6g1v0329800.2
n.a. Glyoxysomal processing protease, glyoxysomal-like protein; TAIR: AT1G28320.1 protease-like protein; Swiss-Prot: sp|Q8VZD4|DEG15_ARATH Glyoxysomal processing protease, glyoxysomal; TrEMBL-Plants: tr|G7ISD6|G7ISD6_MEDTR Glyoxysomal processing protease, glyoxysomal-like protein; Found in the gene: LotjaGi6g1v0329800 LjG1.1_chr6 64498022 64503873 +
2 domain predictions
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LotjaGi6g1v0340800_LC.1
n.a. Protease Do-like protein; TAIR: AT4G18370.1 DEGP protease 5; Swiss-Prot: sp|Q9SEL7|DEGP5_ARATH Protease Do-like 5, chloroplastic; TrEMBL-Plants: tr|I3SH86|I3SH86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0340800_LC LjG1.1_chr6 65472341 65474871 -
2 domain predictions
 –