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Lj1g3v4957560.3

Overview

Field Value
Gene ID Lj1g3v4957560
Transcript ID Lj1g3v4957560.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: proteasome subunit beta type-4-like [Cicer arietinum] gi|502113510|ref|XP_004494673.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF001213
1 230 230 1.10E-94
IPR016295
PANTHER
PTHR11599
4 228 225 3.80E-128 –
PANTHER
PTHR11599:SF5
4 228 225 3.80E-128 –
Gene3D
G3DSA:3.60.20.10
12 224 213 8.50E-70
IPR029055
SUPERFAMILY
SSF56235
12 219 208 1.40E-55
IPR029055
Pfam
PF00227
16 198 183 6.80E-34
IPR001353
CDD
cd03760
16 209 194 3.92E-111
IPR016295
ProSiteProfiles
PS51476
17 199 183 39.776
IPR023333
ProSitePatterns
PS00854
21 68 48 –
IPR016050

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj1g3v4957560.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4957560.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.