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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4981000 |
| Transcript ID | Lj1g3v4981000.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like [Cicer arietinum] gi|502113595|ref|XP_004494699.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | – | – | |
| PANTHER | 1 | 139 | 139 | 8.80E-38 | – | |
| PANTHER | 1 | 139 | 139 | 8.80E-38 | – | |
| SignalP | 1 | 17 | 17 | – | – | |
| Phobius | 1 | 18 | 18 | – | – | |
| Phobius | 7 | 14 | 8 | – | – | |
| Phobius | 15 | 18 | 4 | – | – | |
| Phobius | 19 | 62 | 44 | – | – | |
| TMHMM | 61 | 83 | 23 | – | – | |
| Phobius | 63 | 83 | 21 | – | – | |
| PRINTS | 64 | 84 | 21 | 9.70E-06 | ||
| Hamap | 64 | 137 | 74 | 18.029 | ||
| TIGRFAM | 66 | 112 | 47 | 5.90E-20 | ||
| Pfam | 67 | 116 | 50 | 7.90E-21 | ||
| Phobius | 84 | 140 | 57 | – | – | |
| PRINTS | 84 | 103 | 20 | 9.70E-06 | ||
| MobiDBLite | 110 | 140 | 31 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Protein transport by the Tat complex | The process in which folded proteins are transported across cytoplasmic membranes of bacteria and membranes of organelles derived from bacteria (chloroplasts and mitochondria) by the TAT complex. |
Expression pattern of Lj1g3v4981000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4981000.1, powered by CORGI.
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