Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v4998490.1

Overview

Field Value
Gene ID Lj1g3v4998490
Transcript ID Lj1g3v4998490.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: peroxisome biogenesis protein 12-like [Glycine max] gi|356505983|ref|XP_003521768.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF038074
1 378 378 6.60E-142
IPR017375
PANTHER
PTHR12888
1 378 378 1.40E-140
IPR017375
PANTHER
PTHR12888:SF0
1 378 378 1.40E-140 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 343 343 – –
Pfam
PF04757
21 297 277 3.60E-44
IPR006845
SUPERFAMILY
SSF57850
325 376 52 3.06E-10 –
Gene3D
G3DSA:3.30.40.10
330 370 41 2.80E-06
IPR013083
CDD
cd00162
333 370 38 0.00344232 –
Phobius
TRANSMEMBRANE
344 363 20 – –
Phobius
CYTOPLASMIC_DOMAIN
364 378 15 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005779
Cellular component Integral component of peroxisomal membrane The component of the peroxisomal membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0006625
Biological process Protein targeting to peroxisome The process of directing proteins towards the peroxisome, usually using signals contained within the protein.
Subterm of
GO:0008022
Molecular function Protein C-terminus binding Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj1g3v4998490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4998490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.