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Lj1g3v5021140.1

Overview

Field Value
Gene ID Lj1g3v5021140
Transcript ID Lj1g3v5021140.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: subtilisin-like protease-like [Glycine max] gi|356571210|ref|XP_003553772.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 28 28 – –
PANTHER
PTHR10795
24 345 322 4.70E-173
IPR015500
PANTHER
PTHR10795:SF394
24 345 322 4.70E-173 –
Phobius
TRANSMEMBRANE
29 51 23 – –
TMHMM
TMhelix
30 52 23 – –
SUPERFAMILY
SSF52743
35 188 154 2.62E-35
IPR000209
Phobius
NON_CYTOPLASMIC_DOMAIN
52 345 294 – –
Pfam
PF05922
57 142 86 8.80E-14
IPR010259
Gene3D
G3DSA:3.40.50.200
118 345 228 1.60E-31
IPR000209
Pfam
PF00082
167 333 167 8.30E-16
IPR000209
PRINTS
PR00723
167 186 20 1.50E-05
IPR015500
SUPERFAMILY
SSF52743
238 344 107 2.62E-35
IPR000209
PRINTS
PR00723
246 259 14 1.50E-05
IPR015500

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004252
Molecular function Serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj1g3v5021140.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5021140.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.