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| Field | Value |
|---|---|
| Gene ID | Lj1g3v5034750 |
| Transcript ID | Lj1g3v5034750.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Cyclic nucleotide-gated channel C [Medicago truncatula] gi|357512559|ref|XP_003626568.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 287 | 287 | 0 | – | |
| PANTHER | 1 | 287 | 287 | 0 | – | |
| Phobius | 1 | 99 | 99 | – | – | |
| SUPERFAMILY | 88 | 287 | 200 | 8.77E-31 | – | |
| Pfam | 97 | 420 | 324 | 1.20E-33 | ||
| Phobius | 100 | 122 | 23 | – | – | |
| TMHMM | 100 | 122 | 23 | – | – | |
| Phobius | 123 | 146 | 24 | – | – | |
| Gene3D | 132 | 286 | 155 | 5.70E-18 | – | |
| Phobius | 147 | 169 | 23 | – | – | |
| TMHMM | 148 | 170 | 23 | – | – | |
| Phobius | 170 | 189 | 20 | – | – | |
| TMHMM | 190 | 212 | 23 | – | – | |
| Phobius | 190 | 212 | 23 | – | – | |
| Phobius | 213 | 217 | 5 | – | – | |
| Phobius | 218 | 237 | 20 | – | – | |
| Phobius | 238 | 257 | 20 | – | – | |
| Phobius | 258 | 282 | 25 | – | – | |
| TMHMM | 261 | 283 | 23 | – | – | |
| Phobius | 283 | 387 | 105 | – | – | |
| PANTHER | 333 | 696 | 364 | 0 | – | |
| PANTHER | 333 | 696 | 364 | 0 | – | |
| SUPERFAMILY | 354 | 414 | 61 | 8.77E-31 | – | |
| Gene3D | 354 | 414 | 61 | 5.70E-18 | – | |
| TMHMM | 384 | 406 | 23 | – | – | |
| Phobius | 388 | 406 | 19 | – | – | |
| Phobius | 407 | 700 | 294 | – | – | |
| Gene3D | 417 | 483 | 67 | 1.50E-12 | – | |
| SUPERFAMILY | 421 | 611 | 191 | 6.42E-34 | ||
| Gene3D | 490 | 608 | 119 | 7.60E-27 | ||
| CDD | 492 | 624 | 133 | 1.70E-14 | – | |
| ProSiteProfiles | 492 | 576 | 85 | 11.825 | ||
| SMART | 492 | 623 | 132 | 5.80E-11 | ||
| Coils | 645 | 665 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v5034750.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v5034750.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.