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Lj1g3v5034850.1

Overview

Field Value
Gene ID Lj1g3v5034850
Transcript ID Lj1g3v5034850.1
Lotus japonicus genome version MG20 v3.0
Description E3 ubiquitin ligase [Lotus japonicus] gi|379055939|emb|CCG06551.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10315:SF41
1 306 306 9.10E-248 –
PANTHER
PTHR10315
1 306 306 9.10E-248
IPR004162
SUPERFAMILY
SSF57850
30 83 54 1.50E-06 –
Gene3D
G3DSA:3.30.40.10
35 109 75 5.60E-10
IPR013083
CDD
cd00162
43 83 41 0.00259657 –
ProSiteProfiles
PS50089
44 80 37 9.48
IPR001841
Pfam
PF03145
86 285 200 2.30E-74
IPR018121
ProSiteProfiles
PS51081
97 157 61 14.237
IPR013010
SUPERFAMILY
SSF49599
97 289 193 4.18E-48
IPR008974
Gene3D
G3DSA:3.90.890.10
110 152 43 2.00E-20
IPR013323
CDD
cd03829
158 286 129 1.40E-62 –
Gene3D
G3DSA:2.60.210.10
162 289 128 3.70E-58
IPR008974

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0007275
Biological process Multicellular organism development The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj1g3v5034850.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5034850.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.