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Lj1g3v5048260.1

Overview

Field Value
Gene ID Lj1g3v5048260
Transcript ID Lj1g3v5048260.1
Lotus japonicus genome version MG20 v3.0
Description RAB11B [Lotus japonicus] gi|1370144|emb|CAA98178.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00177
13 192 180 0.0076 –
PANTHER
PTHR24073
20 239 220 1.20E-151 –
PANTHER
PTHR24073:SF345
20 239 220 1.20E-151 –
Gene3D
G3DSA:3.40.50.300
23 200 178 2.90E-67
IPR027417
ProSiteProfiles
PS51419
23 237 215 34.525 –
SUPERFAMILY
SSF52540
24 193 170 1.97E-57
IPR027417
CDD
cd01868
25 188 164 1.05E-112 –
SMART
SM00173
25 191 167 2.90E-25 –
TIGRFAM
TIGR00231
27 181 155 4.20E-34
IPR005225
PRINTS
PR00449
28 49 22 3.20E-38 –
SMART
SM00175
28 191 164 3.20E-99 –
Pfam
PF00071
29 189 161 2.50E-58
IPR001806
SMART
SM00174
30 187 158 2.00E-11 –
SMART
SM00176
33 226 194 5.20E-07 –
PRINTS
PR00449
51 67 17 3.20E-38 –
PRINTS
PR00449
69 91 23 3.20E-38 –
PRINTS
PR00449
131 144 14 3.20E-38 –
PRINTS
PR00449
166 188 23 3.20E-38 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v5048260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5048260.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.