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Lj1g3v5060420.1

Overview

Field Value
Gene ID Lj1g3v5060420
Transcript ID Lj1g3v5060420.1
Lotus japonicus genome version MG20 v3.0
Description rac GTPase activating protein 2 [Lotus japonicus] gi|3695061|gb|AAC62625.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 80 80 – –
PANTHER
PTHR23177
21 43 23 6.50E-267 –
PANTHER
PTHR23177:SF24
21 43 23 6.50E-267 –
PANTHER
PTHR23177
89 483 395 6.50E-267 –
PANTHER
PTHR23177:SF24
89 483 395 6.50E-267 –
Gene3D
G3DSA:3.90.810.10
112 144 33 9.50E-08
IPR000095
Pfam
PF00786
115 144 30 7.20E-05
IPR000095
CDD
cd00132
115 154 40 4.32E-06 –
SMART
SM00285
116 150 35 3.30E-07
IPR000095
Gene3D
G3DSA:1.10.555.10
149 334 186 1.40E-32
IPR000198
SUPERFAMILY
SSF48350
156 335 180 8.83E-37
IPR008936
ProSiteProfiles
PS50238
164 346 183 25.128
IPR000198
SMART
SM00324
175 338 164 3.40E-29
IPR000198
CDD
cd00159
178 334 157 2.26E-31 –
Pfam
PF00620
178 312 135 1.10E-19
IPR000198
MobiDBLite
mobidb-lite
349 388 40 – –
MobiDBLite
mobidb-lite
406 433 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0007165
Biological process Signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
Subterm of
Part of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj1g3v5060420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5060420.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.