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Lj1g3v5062760.1

Overview

Field Value
Gene ID Lj1g3v5062760
Transcript ID Lj1g3v5062760.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: la-related protein 7-like [Cucumis sativus] gi|449492647|ref|XP_004159060.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22792
1 92 92 1.00E-228 –
PANTHER
PTHR22792:SF52
1 92 92 1.00E-228 –
MobiDBLite
mobidb-lite
96 124 29 – –
PANTHER
PTHR22792
110 445 336 1.00E-228 –
PANTHER
PTHR22792:SF52
110 445 336 1.00E-228 –
ProSiteProfiles
PS50961
119 210 92 22.954
IPR006630
Gene3D
G3DSA:1.10.10.10
121 206 86 1.10E-24
IPR011991
SUPERFAMILY
SSF46785
123 213 91 9.98E-22
IPR011991
SMART
SM00715
123 203 81 1.20E-31
IPR006630
Pfam
PF05383
129 186 58 1.80E-15
IPR006630
PRINTS
PR00302
132 149 18 6.70E-08
IPR002344
PRINTS
PR00302
158 173 16 6.70E-08
IPR002344
PRINTS
PR00302
189 202 14 6.70E-08
IPR002344
SUPERFAMILY
SSF54928
200 319 120 2.99E-09
IPR012677
Gene3D
G3DSA:3.30.70.330
212 309 98 6.60E-10
IPR012677
ProSiteProfiles
PS50102
217 314 98 8.996
IPR000504
CDD
cd12288
217 311 95 2.35E-42 –
PRINTS
PR00302
274 292 19 6.70E-08
IPR002344
MobiDBLite
mobidb-lite
355 445 91 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:1990904
Cellular component Ribonucleoprotein complex A macromolecular complex containing both protein and RNA molecules.
Subterm of

Genome browser

LORE1 insertions 30

Expression data

Expression pattern

Expression pattern of Lj1g3v5062760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5062760.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.