Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj2g3v0276760 |
| Transcript ID | Lj2g3v0276760.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | methyl binding domain protein [Populus trichocarpa] gi|224134745|ref|XP_002321896.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 70 | 70 | 14.795 | ||
| SMART | 2 | 73 | 72 | 0.0037 | ||
| SUPERFAMILY | 7 | 55 | 49 | 6.54E-14 | ||
| Gene3D | 7 | 58 | 52 | 2.90E-16 | ||
| Pfam | 7 | 57 | 51 | 2.70E-11 | ||
| PANTHER | 10 | 158 | 149 | 9.10E-41 | – | |
| PANTHER | 10 | 158 | 149 | 9.10E-41 | – | |
| Gene3D | 73 | 119 | 47 | 6.70E-11 | ||
| SUPERFAMILY | 73 | 124 | 52 | 3.60E-11 | ||
| ProSiteProfiles | 75 | 134 | 60 | 6.704 | ||
| Pfam | 75 | 121 | 47 | 3.90E-07 | ||
| MobiDBLite | 174 | 206 | 33 | – | – | |
| PANTHER | 176 | 301 | 126 | 9.10E-41 | – | |
| PANTHER | 176 | 301 | 126 | 9.10E-41 | – | |
| PANTHER | 352 | 502 | 151 | 9.10E-41 | – | |
| PANTHER | 352 | 502 | 151 | 9.10E-41 | – | |
| MobiDBLite | 395 | 431 | 37 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of Lj2g3v0276760.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj2g3v0276760.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.