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Lj2g3v0320640.1

Overview

Field Value
Gene ID Lj2g3v0320640
Transcript ID Lj2g3v0320640.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor WER-like [Vitis vinifera] gi|359491528|ref|XP_002279128.2|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF675
1 117 117 9.90E-68 –
PANTHER
PTHR10641
1 117 117 9.90E-68 –
ProSiteProfiles
PS51294
1 36 36 13.779
IPR017930
Gene3D
G3DSA:1.10.10.60
1 43 43 7.10E-17
IPR009057
SUPERFAMILY
SSF46689
2 83 82 6.50E-24
IPR009057
SMART
SM00717
2 38 37 1.1
IPR001005
Pfam
PF00249
2 36 35 3.90E-10
IPR001005
CDD
cd00167
3 36 34 8.21E-08 –
ProSiteProfiles
PS51294
37 91 55 25.631
IPR017930
SMART
SM00717
41 89 49 5.80E-16
IPR001005
Pfam
PF00249
42 87 46 6.70E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
44 91 48 1.50E-25
IPR009057
CDD
cd00167
45 87 43 9.83E-13 –
MobiDBLite
mobidb-lite
96 126 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj2g3v0320640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0320640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.