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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0346250 |
| Transcript ID | Lj2g3v0346250.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163014|ref|XP_004512696.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 497 | 495 | 4.10E-267 | – | |
| PANTHER | 3 | 497 | 495 | 4.10E-267 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 6.106 | ||
| Pfam | 13 | 57 | 45 | 2.90E-07 | ||
| ProSiteProfiles | 44 | 78 | 35 | 10.468 | ||
| TIGRFAM | 46 | 80 | 35 | 9.50E-06 | ||
| Pfam | 78 | 127 | 50 | 5.40E-10 | ||
| ProSiteProfiles | 79 | 113 | 35 | 9.471 | ||
| TIGRFAM | 81 | 114 | 34 | 1.50E-04 | ||
| ProSiteProfiles | 114 | 148 | 35 | 9.558 | ||
| Pfam | 147 | 176 | 30 | 2.50E-09 | ||
| ProSiteProfiles | 149 | 183 | 35 | 11.148 | ||
| TIGRFAM | 151 | 184 | 34 | 4.90E-07 | ||
| Pfam | 183 | 232 | 50 | 1.30E-17 | ||
| ProSiteProfiles | 184 | 218 | 35 | 11.17 | ||
| TIGRFAM | 186 | 220 | 35 | 2.10E-07 | ||
| ProSiteProfiles | 219 | 253 | 35 | 12.606 | ||
| TIGRFAM | 221 | 255 | 35 | 2.40E-08 | ||
| Gene3D | 222 | 490 | 269 | 5.40E-07 | ||
| Pfam | 253 | 302 | 50 | 4.40E-19 | ||
| ProSiteProfiles | 254 | 288 | 35 | 12.31 | ||
| TIGRFAM | 256 | 290 | 35 | 7.30E-09 | ||
| ProSiteProfiles | 289 | 323 | 35 | 12.255 | ||
| TIGRFAM | 292 | 325 | 34 | 7.10E-10 | ||
| Pfam | 323 | 372 | 50 | 4.10E-20 | ||
| ProSiteProfiles | 324 | 358 | 35 | 13.537 | ||
| TIGRFAM | 326 | 360 | 35 | 1.00E-10 | ||
| ProSiteProfiles | 359 | 393 | 35 | 13.526 | ||
| TIGRFAM | 361 | 394 | 34 | 1.20E-08 | ||
| Pfam | 390 | 419 | 30 | 3.90E-11 | ||
| ProSiteProfiles | 394 | 428 | 35 | 11.762 | ||
| TIGRFAM | 396 | 429 | 34 | 8.30E-07 | ||
| ProSiteProfiles | 429 | 463 | 35 | 13.548 | ||
| Pfam | 429 | 475 | 47 | 2.00E-15 | ||
| TIGRFAM | 432 | 465 | 34 | 4.30E-11 | ||
| ProSiteProfiles | 464 | 497 | 34 | 10.139 | ||
| TIGRFAM | 466 | 496 | 31 | 0.0014 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0346250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0346250.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.