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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0371570 |
| Transcript ID | Lj2g3v0371570.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 24 | 24 | – | – | |
| PANTHER | 3 | 542 | 540 | 1.60E-276 | – | |
| PANTHER | 3 | 542 | 540 | 1.60E-276 | – | |
| ProSiteProfiles | 53 | 87 | 35 | 7.136 | ||
| Gene3D | 68 | 287 | 220 | 2.90E-06 | ||
| Pfam | 87 | 135 | 49 | 6.80E-14 | ||
| ProSiteProfiles | 88 | 122 | 35 | 10.786 | ||
| TIGRFAM | 91 | 124 | 34 | 3.50E-06 | ||
| ProSiteProfiles | 123 | 157 | 35 | 10.841 | ||
| TIGRFAM | 125 | 158 | 34 | 5.80E-06 | ||
| Pfam | 154 | 185 | 32 | 1.20E-08 | ||
| ProSiteProfiles | 158 | 192 | 35 | 10.665 | ||
| TIGRFAM | 160 | 186 | 27 | 2.90E-05 | ||
| Pfam | 190 | 221 | 32 | 2.20E-10 | ||
| ProSiteProfiles | 193 | 227 | 35 | 11.619 | ||
| TIGRFAM | 195 | 229 | 35 | 2.50E-09 | ||
| Pfam | 227 | 276 | 50 | 1.00E-18 | ||
| ProSiteProfiles | 228 | 262 | 35 | 12.167 | ||
| TIGRFAM | 230 | 264 | 35 | 7.00E-08 | ||
| SUPERFAMILY | 232 | 330 | 99 | 3.66E-05 | – | |
| ProSiteProfiles | 263 | 297 | 35 | 13.285 | ||
| TIGRFAM | 265 | 298 | 34 | 1.10E-08 | ||
| Pfam | 297 | 346 | 50 | 8.40E-17 | ||
| ProSiteProfiles | 298 | 332 | 35 | 11.126 | ||
| TIGRFAM | 300 | 334 | 35 | 3.40E-07 | ||
| ProSiteProfiles | 333 | 367 | 35 | 13.099 | ||
| TIGRFAM | 336 | 369 | 34 | 4.30E-11 | ||
| Pfam | 364 | 395 | 32 | 3.50E-11 | ||
| ProSiteProfiles | 368 | 402 | 35 | 10.731 | ||
| TIGRFAM | 370 | 399 | 30 | 2.20E-07 | ||
| Gene3D | 389 | 536 | 148 | 9.70E-04 | ||
| SUPERFAMILY | 402 | 480 | 79 | 3.66E-05 | – | |
| Pfam | 403 | 451 | 49 | 6.70E-18 | ||
| ProSiteProfiles | 403 | 437 | 35 | 13.066 | ||
| TIGRFAM | 405 | 438 | 34 | 1.90E-08 | ||
| ProSiteProfiles | 438 | 472 | 35 | 12.803 | ||
| TIGRFAM | 440 | 473 | 34 | 3.40E-07 | ||
| ProSiteProfiles | 473 | 507 | 35 | 11.838 | ||
| Pfam | 473 | 519 | 47 | 1.90E-13 | ||
| TIGRFAM | 475 | 508 | 34 | 3.40E-08 | ||
| ProSiteProfiles | 508 | 542 | 35 | 10.019 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0371570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0371570.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.