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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0523240 |
| Transcript ID | Lj2g3v0523240.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like [Cicer arietinum] gi|502162909|ref|XP_004512658.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 22 | 22 | – | – | |
| PANTHER | 8 | 364 | 357 | 1.70E-175 | – | |
| PANTHER | 8 | 364 | 357 | 1.70E-175 | – | |
| ProSiteProfiles | 57 | 91 | 35 | 7.848 | ||
| Pfam | 91 | 139 | 49 | 4.90E-15 | ||
| ProSiteProfiles | 92 | 126 | 35 | 10.742 | ||
| Gene3D | 93 | 189 | 97 | 9.40E-05 | ||
| TIGRFAM | 94 | 128 | 35 | 6.10E-07 | ||
| SUPERFAMILY | 102 | 335 | 234 | 8.63E-06 | – | |
| ProSiteProfiles | 127 | 161 | 35 | 10.337 | ||
| TIGRFAM | 129 | 162 | 34 | 4.10E-05 | ||
| Pfam | 158 | 188 | 31 | 1.60E-07 | ||
| ProSiteProfiles | 162 | 196 | 35 | 12.244 | ||
| TIGRFAM | 164 | 198 | 35 | 5.80E-09 | ||
| Pfam | 196 | 244 | 49 | 4.40E-20 | ||
| ProSiteProfiles | 197 | 231 | 35 | 12.617 | ||
| TIGRFAM | 199 | 233 | 35 | 1.60E-10 | ||
| ProSiteProfiles | 232 | 266 | 35 | 11.071 | ||
| TIGRFAM | 234 | 268 | 35 | 1.50E-05 | ||
| Pfam | 262 | 294 | 33 | 5.50E-09 | ||
| Gene3D | 262 | 327 | 66 | 9.40E-05 | ||
| ProSiteProfiles | 267 | 301 | 35 | 12.452 | ||
| TIGRFAM | 269 | 303 | 35 | 1.70E-08 | ||
| Pfam | 301 | 350 | 50 | 8.40E-19 | ||
| ProSiteProfiles | 302 | 336 | 35 | 12.244 | ||
| TIGRFAM | 304 | 338 | 35 | 1.20E-07 | ||
| ProSiteProfiles | 337 | 364 | 28 | 10.687 | ||
| TIGRFAM | 339 | 364 | 26 | 1.50E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0523240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0523240.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.