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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0571350 |
| Transcript ID | Lj2g3v0571350.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial-like [Glycine max] gi|356555295|ref|XP_003545969.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 399 | 399 | 1.30E-275 | – | |
| PANTHER | 1 | 399 | 399 | 1.30E-275 | – | |
| ProSiteProfiles | 18 | 48 | 31 | 9.12 | ||
| TIGRFAM | 20 | 52 | 33 | 6.00E-04 | ||
| Pfam | 20 | 47 | 28 | 2.50E-05 | ||
| ProSiteProfiles | 54 | 88 | 35 | 5.842 | ||
| ProSiteProfiles | 89 | 119 | 31 | 7.52 | ||
| Gene3D | 109 | 151 | 43 | 3.70E-04 | ||
| ProSiteProfiles | 120 | 154 | 35 | 11.389 | ||
| Pfam | 120 | 166 | 47 | 4.90E-08 | ||
| TIGRFAM | 122 | 156 | 35 | 5.60E-07 | ||
| Gene3D | 189 | 210 | 22 | 3.70E-04 | ||
| ProSiteProfiles | 190 | 220 | 31 | 6.423 | ||
| Pfam | 220 | 268 | 49 | 5.50E-08 | ||
| ProSiteProfiles | 221 | 255 | 35 | 10.216 | ||
| TIGRFAM | 223 | 256 | 34 | 4.30E-05 | ||
| ProSiteProfiles | 256 | 291 | 36 | 7.87 | ||
| ProSiteProfiles | 292 | 322 | 31 | 6.774 | ||
| Pfam | 295 | 319 | 25 | 0.024 | ||
| Gene3D | 345 | 378 | 34 | 3.70E-04 | ||
| ProSiteProfiles | 358 | 388 | 31 | 6.27 | ||
| Pfam | 394 | 517 | 124 | 1.80E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj2g3v0571350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0571350.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.