Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj2g3v0632400 |
| Transcript ID | Lj2g3v0632400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] gi|356531092|ref|XP_003534112.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | – | – | |
| Phobius | 1 | 210 | 210 | – | – | |
| PANTHER | 46 | 396 | 351 | 0 | – | |
| PANTHER | 46 | 396 | 351 | 0 | – | |
| SUPERFAMILY | 200 | 396 | 197 | 1.77E-24 | – | |
| Gene3D | 209 | 395 | 187 | 7.20E-16 | – | |
| Pfam | 210 | 528 | 319 | 1.50E-19 | ||
| TMHMM | 211 | 233 | 23 | – | – | |
| Phobius | 211 | 233 | 23 | – | – | |
| Phobius | 234 | 238 | 5 | – | – | |
| Phobius | 239 | 262 | 24 | – | – | |
| TMHMM | 243 | 265 | 23 | – | – | |
| Phobius | 263 | 299 | 37 | – | – | |
| TMHMM | 299 | 321 | 23 | – | – | |
| Phobius | 300 | 320 | 21 | – | – | |
| Phobius | 321 | 331 | 11 | – | – | |
| Phobius | 332 | 350 | 19 | – | – | |
| Phobius | 351 | 369 | 19 | – | – | |
| TMHMM | 370 | 392 | 23 | – | – | |
| Phobius | 370 | 391 | 22 | – | – | |
| Phobius | 392 | 497 | 106 | – | – | |
| PANTHER | 446 | 671 | 226 | 0 | – | |
| PANTHER | 446 | 671 | 226 | 0 | – | |
| Gene3D | 464 | 524 | 61 | 7.20E-16 | – | |
| SUPERFAMILY | 464 | 529 | 66 | 1.77E-24 | – | |
| TMHMM | 494 | 516 | 23 | – | – | |
| Phobius | 498 | 523 | 26 | – | – | |
| Phobius | 524 | 769 | 246 | – | – | |
| SUPERFAMILY | 529 | 718 | 190 | 1.31E-26 | ||
| Gene3D | 538 | 591 | 54 | 2.60E-10 | – | |
| Gene3D | 600 | 718 | 119 | 8.00E-16 | ||
| CDD | 601 | 717 | 117 | 1.03E-10 | – | |
| ProSiteProfiles | 601 | 666 | 66 | 9.982 | ||
| PANTHER | 690 | 766 | 77 | 0 | – | |
| PANTHER | 690 | 766 | 77 | 0 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v0632400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj2g3v0632400.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.