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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0632420 |
| Transcript ID | Lj2g3v0632420.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Glycine max] gi|356561853|ref|XP_003549191.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 167 | 145 | 0 | – | |
| PANTHER | 23 | 167 | 145 | 0 | – | |
| ProSiteProfiles | 69 | 103 | 35 | 9.624 | ||
| Pfam | 71 | 101 | 31 | 0.043 | ||
| TIGRFAM | 72 | 104 | 33 | 1.40E-04 | ||
| ProSiteProfiles | 139 | 169 | 31 | 7.191 | ||
| ProSiteProfiles | 170 | 204 | 35 | 14.261 | ||
| Pfam | 170 | 216 | 47 | 7.60E-13 | ||
| TIGRFAM | 172 | 205 | 34 | 3.90E-10 | ||
| Gene3D | 180 | 236 | 57 | 1.60E-05 | ||
| PANTHER | 203 | 620 | 418 | 0 | – | |
| PANTHER | 203 | 620 | 418 | 0 | – | |
| ProSiteProfiles | 205 | 239 | 35 | 11.279 | ||
| TIGRFAM | 207 | 240 | 34 | 3.40E-06 | ||
| ProSiteProfiles | 275 | 305 | 31 | 6.456 | ||
| Pfam | 279 | 304 | 26 | 1.1 | ||
| ProSiteProfiles | 306 | 340 | 35 | 8.265 | ||
| Pfam | 310 | 334 | 25 | 0.017 | ||
| TIGRFAM | 310 | 341 | 32 | 0.0014 | ||
| Gene3D | 339 | 376 | 38 | 1.60E-05 | ||
| Pfam | 341 | 387 | 47 | 2.90E-10 | ||
| ProSiteProfiles | 341 | 375 | 35 | 12.375 | ||
| TIGRFAM | 343 | 377 | 35 | 5.70E-08 | ||
| ProSiteProfiles | 411 | 441 | 31 | 7.267 | ||
| Gene3D | 414 | 533 | 120 | 1.60E-05 | ||
| Pfam | 416 | 438 | 23 | 0.18 | ||
| Pfam | 441 | 488 | 48 | 1.40E-12 | ||
| ProSiteProfiles | 442 | 476 | 35 | 11.751 | ||
| TIGRFAM | 444 | 477 | 34 | 1.10E-06 | ||
| ProSiteProfiles | 477 | 512 | 36 | 8.681 | ||
| TIGRFAM | 479 | 510 | 32 | 1.30E-04 | ||
| ProSiteProfiles | 513 | 543 | 31 | 7.267 | ||
| Pfam | 517 | 540 | 24 | 0.029 | ||
| ProSiteProfiles | 579 | 613 | 35 | 8.364 | ||
| Pfam | 585 | 611 | 27 | 0.47 | ||
| Pfam | 615 | 739 | 125 | 6.00E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj2g3v0632420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0632420.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.