Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v0813200.1

Overview

Field Value
Gene ID Lj2g3v0813200
Transcript ID Lj2g3v0813200.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1-like [Cicer arietinum] gi|502158924|ref|XP_004511328.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF000747
1 206 206 3.80E-89
IPR014381
PANTHER
PTHR10535
4 206 203 1.10E-122 –
Gene3D
G3DSA:3.40.1340.10
4 133 130 6.30E-49
IPR005571
SUPERFAMILY
SSF53036
5 134 130 7.59E-42
IPR005571
Pfam
PF03871
6 90 85 2.50E-34
IPR005571
SUPERFAMILY
SSF55287
131 206 76 9.81E-31
IPR000783
Pfam
PF01191
133 205 73 2.20E-35
IPR000783
Hamap
MF_00025
133 206 74 22.533
IPR020609
Gene3D
G3DSA:3.90.940.20
134 206 73 3.40E-38
IPR000783
ProDom
PD005155
140 205 66 8.00E-29
IPR000783

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v0813200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0813200.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.