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RNA polymerase Rpb5, N-terminal domain
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal [Medicago truncatula] gi|87162511|gb|ABD28306.1| | 13 | ||
| – | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1-like [Cicer arietinum] gi|502108221|ref|XP_004493418.1| | 14 | ||
| – | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1-like [Cicer arietinum] gi|502158924|ref|XP_004511328.1| | 12 | ||
| – | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1-like [Cicer arietinum] gi|502158924|ref|XP_004511328.1| | 14 | ||
| – | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1-like [Cicer arietinum] gi|502160738|ref|XP_004511874.1| | 12 | ||
| – | DNA-directed RNA polymerase II; TAIR: AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein; Swiss-Prot: sp|Q9M1J2|RPE5A_ARATH DNA-directed RNA polymerase V subunit 5A; TrEMBL-Plants: tr|V7CXU1|V7CXU1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0665900 | 16 | ||
| – | DNA-directed RNA polymerase II; TAIR: AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein; Swiss-Prot: sp|O81098|RPB5A_ARATH DNA-directed RNA polymerases II and IV subunit 5A; TrEMBL-Plants: tr|I3SCP2|I3SCP2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0219500 | 17 | ||
| – | DNA-directed RNA polymerase II, putative; TAIR: AT3G54490.1 RNA polymerase II fifth largest subunit, E; Swiss-Prot: sp|Q9M1H8|RPE5C_ARATH DNA-directed RNA polymerase V subunit 5C; TrEMBL-Plants: tr|Q2HW77|Q2HW77_MEDTR RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal; Found in the gene: LotjaGi3g1v0112400 | 15 | ||
| – | DNA-directed RNA polymerase II; TAIR: AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein; Swiss-Prot: sp|O81098|RPB5A_ARATH DNA-directed RNA polymerases II and IV subunit 5A; TrEMBL-Plants: tr|C6SVA4|C6SVA4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0457100 | 15 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SSF55287 | SUPERFAMILY | 1 | 11.11 |