Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v0906460.1

Overview

Field Value
Gene ID Lj2g3v0906460
Transcript ID Lj2g3v0906460.1
Lotus japonicus genome version MG20 v3.0
Description transcription factor MYBJ6 [Glycine max] gi|351721498|ref|NP_001237467.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF603
1 270 270 5.30E-108 –
PANTHER
PTHR10641
1 270 270 5.30E-108 –
ProSiteProfiles
PS51294
9 62 54 13.806
IPR017930
SUPERFAMILY
SSF46689
11 109 99 3.05E-28
IPR009057
SMART
SM00717
13 64 52 1.10E-11
IPR001005
Pfam
PF00249
14 62 49 8.70E-15
IPR001005
Gene3D
G3DSA:1.10.10.60
15 69 55 5.60E-23
IPR009057
CDD
cd00167
16 62 47 6.67E-09 –
ProSiteProfiles
PS51294
63 117 55 20.692
IPR017930
SMART
SM00717
67 115 49 9.40E-13
IPR001005
Pfam
PF00249
70 111 42 3.90E-13
IPR001005
Gene3D
G3DSA:1.10.10.60
70 116 47 2.70E-22
IPR009057
CDD
cd00167
71 113 43 1.06E-10 –
MobiDBLite
mobidb-lite
258 277 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v0906460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0906460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.