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Lj2g3v0911840.1

Overview

Field Value
Gene ID Lj2g3v0911840
Transcript ID Lj2g3v0911840.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor MYB1R1 [Glycine max] gi|356513215|ref|XP_003525309.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12374
3 170 168 1.80E-96 –
PANTHER
PTHR12374:SF19
3 170 168 1.80E-96 –
Gene3D
G3DSA:4.10.60.10
3 20 18 8.60E-04
IPR001878
ProSiteProfiles
PS51294
94 150 57 19.277
IPR017930
SUPERFAMILY
SSF46689
95 149 55 1.94E-17
IPR009057
TIGRFAM
TIGR01557
97 148 52 9.30E-18
IPR006447
Gene3D
G3DSA:1.10.10.60
98 144 47 6.00E-11
IPR009057
SMART
SM00717
98 148 51 1.60E-09
IPR001005
Pfam
PF00249
101 145 45 8.90E-11
IPR001005
CDD
cd00167
101 146 46 1.04E-08 –
MobiDBLite
mobidb-lite
166 186 21 – –
MobiDBLite
mobidb-lite
204 239 36 – –
MobiDBLite
mobidb-lite
257 277 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj2g3v0911840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0911840.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.