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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1002560 |
| Transcript ID | Lj2g3v1002560.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ATPase [Medicago truncatula] gi|357495971|ref|XP_003618274.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 81 | 81 | – | – | |
| PANTHER | 5 | 887 | 883 | 0 | – | |
| PANTHER | 5 | 887 | 883 | 0 | ||
| Pfam | 40 | 105 | 66 | 2.30E-22 | ||
| SUPERFAMILY | 48 | 141 | 94 | 4.18E-27 | – | |
| TIGRFAM | 55 | 887 | 833 | 0 | ||
| Phobius | 82 | 100 | 19 | – | – | |
| Gene3D | 82 | 205 | 124 | 5.60E-29 | ||
| TMHMM | 86 | 108 | 23 | – | – | |
| Phobius | 101 | 105 | 5 | – | – | |
| Phobius | 106 | 123 | 18 | – | – | |
| Coils | 116 | 136 | 21 | – | – | |
| Phobius | 124 | 295 | 172 | – | – | |
| SUPERFAMILY | 142 | 203 | 62 | 6.67E-12 | – | |
| PRINTS | 184 | 198 | 15 | 1.20E-07 | – | |
| SUPERFAMILY | 238 | 278 | 41 | 6.67E-12 | – | |
| Gene3D | 243 | 279 | 37 | 5.60E-29 | ||
| SUPERFAMILY | 280 | 412 | 133 | 4.18E-27 | – | |
| TMHMM | 296 | 318 | 23 | – | – | |
| Phobius | 296 | 317 | 22 | – | – | |
| Phobius | 318 | 351 | 34 | – | – | |
| Phobius | 352 | 374 | 23 | – | – | |
| TMHMM | 352 | 374 | 23 | – | – | |
| Phobius | 375 | 887 | 513 | – | – | |
| SUPERFAMILY | 406 | 430 | 25 | 5.85E-28 | ||
| Gene3D | 408 | 459 | 52 | 1.20E-45 | ||
| PRINTS | 418 | 432 | 15 | 1.20E-07 | – | |
| ProSitePatterns | 420 | 426 | 7 | – | ||
| SUPERFAMILY | 495 | 655 | 161 | 3.05E-23 | ||
| Gene3D | 506 | 702 | 197 | 1.20E-45 | ||
| Pfam | 535 | 623 | 89 | 9.20E-11 | – | |
| SUPERFAMILY | 647 | 755 | 109 | 5.85E-28 | ||
| Gene3D | 703 | 759 | 57 | 2.80E-39 | ||
| Gene3D | 836 | 885 | 50 | 2.80E-39 | ||
| SUPERFAMILY | 840 | 886 | 47 | 5.85E-28 | ||
| PRINTS | 866 | 885 | 20 | 1.20E-07 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Phospholipid transport | The directed movement of phospholipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Phospholipids are any lipids containing phosphoric acid as a mono- or diester. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Expression pattern of Lj2g3v1002560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1002560.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.