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Lj2g3v1068710.1

Overview

Field Value
Gene ID Lj2g3v1068710
Transcript ID Lj2g3v1068710.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: vesicle transport v-SNARE 13-like [Cicer arietinum] gi|502091039|ref|XP_004489422.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21230
1 175 175 1.40E-94 –
Gene3D
G3DSA:1.20.58.400
1 94 94 1.70E-33 –
PANTHER
PTHR21230:SF33
1 175 175 1.40E-94 –
SUPERFAMILY
SSF47661
6 93 88 1.10E-27
IPR010989
Pfam
PF05008
12 90 79 4.80E-25
IPR007705
Coils
Coil
67 87 21 – –
Gene3D
G3DSA:1.20.5.110
127 174 48 1.00E-14 –
CDD
cd15862
127 175 49 4.77E-16 –
Pfam
PF12352
128 175 48 8.10E-14 –
SUPERFAMILY
SSF58038
130 175 46 1.20E-10 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj2g3v1068710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1068710.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.