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Lj2g3v1068730.1

Overview

Field Value
Gene ID Lj2g3v1068730
Transcript ID Lj2g3v1068730.1
Lotus japonicus genome version MG20 v3.0
Description Ethylene-responsive transcription factor [Medicago truncatula] gi|357496535|ref|XP_003618556.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31194:SF14
1 161 161 1.90E-103 –
PANTHER
PTHR31194
1 161 161 1.90E-103
IPR017392
CDD
cd00018
41 98 58 5.99E-32
IPR001471
SUPERFAMILY
SSF54171
42 99 58 4.05E-19
IPR016177
SMART
SM00380
42 105 64 2.00E-35
IPR001471
Gene3D
G3DSA:3.30.730.10
42 98 57 2.20E-27
IPR001471
ProSiteProfiles
PS51032
42 99 58 19.559
IPR001471
Pfam
PF00847
42 91 50 1.00E-13
IPR001471
PRINTS
PR00367
43 54 12 6.10E-08
IPR001471
PRINTS
PR00367
65 81 17 6.10E-08
IPR001471
PANTHER
PTHR31194:SF14
203 336 134 1.90E-103 –
PANTHER
PTHR31194
203 336 134 1.90E-103
IPR017392
MobiDBLite
mobidb-lite
217 247 31 – –
Coils
Coil
337 357 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj2g3v1068730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1068730.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.