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Lj2g3v1168830.1

Overview

Field Value
Gene ID Lj2g3v1168830
Transcript ID Lj2g3v1168830.1
Lotus japonicus genome version MG20 v3.0
Description MYB-type transcription factor [Lotus japonicus] gi|283132363|dbj|BAI63587.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31003
1 374 374 9.80E-167 –
PANTHER
PTHR31003:SF4
1 374 374 9.80E-167 –
MobiDBLite
mobidb-lite
89 112 24 – –
MobiDBLite
mobidb-lite
170 211 42 – –
Gene3D
G3DSA:1.10.10.60
205 266 62 1.10E-26
IPR009057
ProSiteProfiles
PS51294
205 265 61 13.698
IPR017930
SUPERFAMILY
SSF46689
206 266 61 7.53E-17
IPR009057
TIGRFAM
TIGR01557
208 263 56 1.90E-25
IPR006447
Pfam
PF00249
210 259 50 4.40E-07
IPR001005
MobiDBLite
mobidb-lite
336 375 40 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj2g3v1168830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1168830.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.