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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1192980 |
| Transcript ID | Lj2g3v1192980.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Theobroma cacao] gi|508710299|gb|EOY02196.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 81 | 81 | – | – | |
| PANTHER | 5 | 1184 | 1180 | 0 | – | |
| PANTHER | 5 | 1184 | 1180 | 0 | ||
| Pfam | 40 | 106 | 67 | 1.30E-20 | ||
| SUPERFAMILY | 52 | 141 | 90 | 3.27E-57 | – | |
| TIGRFAM | 55 | 1144 | 1090 | 0 | ||
| Phobius | 82 | 100 | 19 | – | – | |
| TMHMM | 82 | 96 | 15 | – | – | |
| Gene3D | 83 | 211 | 129 | 9.70E-30 | ||
| TMHMM | 101 | 123 | 23 | – | – | |
| Phobius | 101 | 105 | 5 | – | – | |
| Phobius | 106 | 123 | 18 | – | – | |
| Phobius | 124 | 301 | 178 | – | – | |
| SUPERFAMILY | 140 | 209 | 70 | 4.58E-13 | – | |
| SUPERFAMILY | 244 | 283 | 40 | 4.58E-13 | – | |
| Gene3D | 249 | 285 | 37 | 9.70E-30 | ||
| SUPERFAMILY | 286 | 418 | 133 | 3.27E-57 | – | |
| Phobius | 302 | 324 | 23 | – | – | |
| TMHMM | 302 | 324 | 23 | – | – | |
| Phobius | 325 | 357 | 33 | – | – | |
| TMHMM | 358 | 380 | 23 | – | – | |
| Phobius | 358 | 380 | 23 | – | – | |
| Phobius | 381 | 921 | 541 | – | – | |
| SUPERFAMILY | 412 | 436 | 25 | 8.41E-33 | ||
| Gene3D | 414 | 460 | 47 | 1.60E-45 | ||
| PRINTS | 424 | 438 | 15 | 6.00E-07 | – | |
| ProSitePatterns | 426 | 432 | 7 | – | ||
| SUPERFAMILY | 492 | 695 | 204 | 3.92E-24 | ||
| Gene3D | 503 | 701 | 199 | 1.60E-45 | ||
| Pfam | 521 | 619 | 99 | 2.70E-11 | – | |
| SUPERFAMILY | 693 | 751 | 59 | 8.41E-33 | ||
| Gene3D | 702 | 758 | 57 | 1.30E-48 | ||
| TIGRFAM | 827 | 941 | 115 | 6.00E-32 | ||
| Gene3D | 830 | 916 | 87 | 1.30E-48 | ||
| SUPERFAMILY | 833 | 903 | 71 | 8.41E-33 | ||
| PRINTS | 859 | 878 | 20 | 6.00E-07 | – | |
| Pfam | 887 | 1137 | 251 | 2.60E-84 | ||
| SUPERFAMILY | 908 | 1137 | 230 | 3.27E-57 | – | |
| TMHMM | 920 | 942 | 23 | – | – | |
| Phobius | 922 | 939 | 18 | – | – | |
| Phobius | 940 | 950 | 11 | – | – | |
| Phobius | 951 | 971 | 21 | – | – | |
| TMHMM | 952 | 971 | 20 | – | – | |
| Phobius | 972 | 1000 | 29 | – | – | |
| Phobius | 1001 | 1023 | 23 | – | – | |
| TMHMM | 1001 | 1020 | 20 | – | – | |
| Phobius | 1024 | 1042 | 19 | – | – | |
| TMHMM | 1040 | 1062 | 23 | – | – | |
| Phobius | 1043 | 1062 | 20 | – | – | |
| Phobius | 1063 | 1068 | 6 | – | – | |
| Phobius | 1069 | 1088 | 20 | – | – | |
| TMHMM | 1069 | 1088 | 20 | – | – | |
| Phobius | 1089 | 1107 | 19 | – | – | |
| Phobius | 1108 | 1128 | 21 | – | – | |
| TMHMM | 1108 | 1130 | 23 | – | – | |
| Phobius | 1129 | 1194 | 66 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Phospholipid transport | The directed movement of phospholipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Phospholipids are any lipids containing phosphoric acid as a mono- or diester. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Expression pattern of Lj2g3v1192980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1192980.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.