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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1197780 |
| Transcript ID | Lj2g3v1197780.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ASC1-like protein-like [Glycine max] gi|356558997|ref|XP_003547788.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 178 | 178 | 1.30E-121 | ||
| Phobius | 1 | 31 | 31 | – | – | |
| PANTHER | 1 | 178 | 178 | 1.30E-121 | – | |
| ProSiteProfiles | 1 | 157 | 157 | 26.552 | ||
| SMART | 1 | 157 | 157 | 4.10E-30 | ||
| Pfam | 2 | 150 | 149 | 1.40E-32 | ||
| Phobius | 32 | 56 | 25 | – | – | |
| Phobius | 57 | 76 | 20 | – | – | |
| Phobius | 77 | 97 | 21 | – | – | |
| TMHMM | 78 | 100 | 23 | – | – | |
| Phobius | 98 | 124 | 27 | – | – | |
| Phobius | 125 | 146 | 22 | – | – | |
| TMHMM | 125 | 147 | 23 | – | – | |
| Phobius | 147 | 178 | 32 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj2g3v1197780.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1197780.1, powered by CORGI.
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